| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,237,213 – 12,237,303 |
| Length | 90 |
| Max. P | 0.531210 |
| Location | 12,237,213 – 12,237,303 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 59.76 |
| Shannon entropy | 0.70094 |
| G+C content | 0.45071 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -7.44 |
| Energy contribution | -8.60 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.531210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12237213 90 - 23011544 AAUUACUUU--CUGCUUUGCUUGUUGCUUCUGCCACAAGGAGACGU---CGGUGGUCUUGCCACCCGAAAAAAAAAACAAAAAAAAAAACGAAAA ......(((--(.(((((.(((((.((....)).))))).))).))---.(((((.....))))).))))......................... ( -19.60, z-score = -1.51, R) >droSim1.chr2L 12036084 82 - 22036055 AAUUACUUU--CUGCUUUGCUUGUUGCUUCUGCCACAAGGAGACGUCGGCGGUGGUCCUGCCACCCGAAAAAUAAGAAAAAAAA----------- ......(((--((..(((.(((((.((....)).))))).)))..((((..((((.....))))))))......))))).....----------- ( -21.60, z-score = -1.43, R) >droSec1.super_16 427642 85 - 1878335 AAUUACUUU--CUGCUUUGCUUGUUGCUUCUGCCACAAGGAGACGU---CGGGGGUCCUGCCACCCGAAAAUAGGAAAAAAAAAAAAAAA----- ......(((--(((.(((.(((((.((....)).))))).)))..(---((((((.....)).)))))...)))))).............----- ( -23.20, z-score = -1.75, R) >droWil1.scaffold_180708 2642732 90 + 12563649 AAUUACUUU--CUGCUUUGCUGCUUGUUGCUUCUUCAAGCAGA-GCGACCUCAUACCCCGCCAUCCAAAAACGAAGACCAAGAAAACUGGAAA-- ......(((--((.((((((((((((.........))))))).-(((...........)))..........)))))....)))))........-- ( -17.70, z-score = -1.20, R) >droMoj3.scaffold_6500 22351466 77 - 32352404 AAUUACUUCGACUGCUGCUGGUGCUGCCGCUGCUCUUGCCGCUUGU---UGCUUCUUCGUGCAGUCGAGCAGAGCCAAAA--------------- ......(((((((((((..((.((.((.((.((....)).))..))---.)).))..)).)))))))))...........--------------- ( -22.90, z-score = -0.05, R) >consensus AAUUACUUU__CUGCUUUGCUUGUUGCUUCUGCCACAAGGAGACGU___CGGUGGUCCUGCCACCCGAAAAAAAAAAAAAAAAAAA_________ .............(((((.(((((.((....)).))))).))).))....(((((.....))))).............................. ( -7.44 = -8.60 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:38 2011