| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,987,902 – 20,987,995 |
| Length | 93 |
| Max. P | 0.511306 |
| Location | 20,987,902 – 20,987,995 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 69.37 |
| Shannon entropy | 0.53496 |
| G+C content | 0.43204 |
| Mean single sequence MFE | -21.63 |
| Consensus MFE | -7.61 |
| Energy contribution | -8.49 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20987902 93 - 22422827 AUACCAUUUAACGCAAGAAACUCAUAUUUCAGUUUCACCGUCAGUACGGCUGAUGCACUUACUACU-UAGCAAUCAGCUGUUUUGCGGACAAUU ................((((((........)))))).(((.(((.(((((((((((..........-..)).))))))))).))))))...... ( -26.10, z-score = -4.33, R) >droEre2.scaffold_4690 17552850 88 - 18748788 CUACUUUGCAGUGCAAGAAUCUCAUAAAGCAGUAAAGCAGUU-CUCCCGCCAGUGCG-----GCAUAGCGCAAUCAGCUGUCUGCACAACCAUA ((.((((((..(((..............))))))))).))..-.........(((((-----(.(((((.......)))))))))))....... ( -21.74, z-score = -0.62, R) >droYak2.chrX 20187446 87 - 21770863 UUACUUUCCAGCGCGAGAAAAUUAAACUUUAAAUGCCCCGCCAGUCCAGCAUAGG-------UGCUAUAGCAAGCAGCUGUUUGGCAGACAAUC ...........(....)......................(((((..((((.....-------(((....)))....)))).)))))........ ( -16.00, z-score = 0.79, R) >droSec1.super_8 3271220 86 - 3762037 AUACCUUUUAAUGCAAGAAACUCAUACUUUAGUUUCACCGUCAGUGCGGCUGAUG-------UACU-UAGCAAUCAGCUGUUUUGCCGACAAUU ................((((((........))))))...(((.((((((((((((-------(...-..)).)))))))))...)).))).... ( -22.10, z-score = -2.55, R) >droSim1.chrX 16128008 86 - 17042790 AUACCUUUUAACGCAAGAAACUCAUACUUCAGUUUCACCGUCAGUGCGGCUGAUG-------UACU-UAGCAAUCAGCUGUUUUGCCGACAAUU ................((((((........))))))...(((.((((((((((((-------(...-..)).)))))))))...)).))).... ( -22.20, z-score = -2.61, R) >consensus AUACCUUUUAACGCAAGAAACUCAUACUUCAGUUUCACCGUCAGUCCGGCUGAUG_______UACU_UAGCAAUCAGCUGUUUUGCCGACAAUU .......................................(((.(((((((((((..................))))))))...))).))).... ( -7.61 = -8.49 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:41 2011