| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,970,552 – 20,970,672 |
| Length | 120 |
| Max. P | 0.947886 |
| Location | 20,970,552 – 20,970,672 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.22 |
| Shannon entropy | 0.37967 |
| G+C content | 0.48946 |
| Mean single sequence MFE | -33.29 |
| Consensus MFE | -22.58 |
| Energy contribution | -21.63 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20970552 120 - 22422827 UCAUUAAUAUCGCUCAUUCUUCUAUCUUUUCAGUCGGGCCAUGUACAAGCACCAACGCGAGACUGGUCACCACAAUUGGCCACACAACUGCAGCAAGUGUGGCCAGGUCUUUCGCACAUC ...........((...................((.((((((.((....((......))...))))))).).))..((((((((((...........)))))))))).......))..... ( -29.80, z-score = -1.53, R) >droAna3.scaffold_13334 312068 117 + 1562580 CAAUUACUAAUAUAAUCUCCCCUAAAAU---AGCCGUUCUUUGUACAAACAUCAACGAGAGGCUGGCCACCACAACUGGUCACACAAGUGCGAGAAGUGUGGCCAGAUCUUUCGCACGGC ............................---.(((((....(((....)))....(((((((((((((((.((..((.(.(((....)))).))..)))))))))).))))))).))))) ( -37.60, z-score = -4.07, R) >droEre2.scaffold_4690 17536696 120 - 18748788 UGAAAACUGUCGCUCAUUCUUCAAUCCUUUCAGCCGCGCCAUGUACAAGCAUCAGCGCGAGACUGGCCACCACACCUGGUCACACAAUUGCGGCAAGUGUGGCCAGGUCUUCCGCACAGA ......((((.((................((((((((((.((((....))))..))))).).)))).......((((((((((((...........)))))))))))).....)))))). ( -41.20, z-score = -2.33, R) >droYak2.chrX 20170277 120 - 21770863 UCAUUAUUGUCGUUCGUUCUUCCAUCUUUUCAGACGCGCCAUGUACAAGCAUCAACGCGAGACUGGUCAUCACGCCUGGUCACACAACUGCAUCAAGUGUGGCCAGGUCUUUCGCACAGC ......((((((...((....((((((.......((((..((((....))))...))))))).))).....))((((((((((((...........))))))))))))....)).)))). ( -32.21, z-score = -1.28, R) >droSec1.super_8 3253860 120 - 3762037 UUAUUAAUAUCGCUUAAUCUUCUAUCUUUUUAGUCGGGCCAUGUACAAGCAUCAACGCGUGACUGGUCACCACAAUUGGCCACACAACUGCAGCAAGUGUGGCCAGGUCUUCCGUACAUC ................................((((((((.(((....((......))((((....)))).)))..(((((((((...........))))))))))))...))).))... ( -29.80, z-score = -1.54, R) >droSim1.chrX_random 5404903 120 - 5698898 UUAUUAAUAUCGCUUAAUCUUCUAUCUUUUUAGUCGGGCCAUGUACAAGCACCAACGCGAGACUGGUCACCACAAUUGGCCAUACAACUGCAGCAAGUGUGGCCAGGUCUUCCGUACAUC ...........(((..(....(((......))))..))).((((((..((......))((((((((...)).....(((((((((...........)))))))))))))))..)))))). ( -29.10, z-score = -1.26, R) >consensus UCAUUAAUAUCGCUCAUUCUUCUAUCUUUUCAGUCGGGCCAUGUACAAGCAUCAACGCGAGACUGGUCACCACAACUGGCCACACAACUGCAGCAAGUGUGGCCAGGUCUUCCGCACAGC ...........((................((((((..((..(((....))).....))..)))))).........((((((((((...........)))))))))).......))..... (-22.58 = -21.63 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:40 2011