Locus 15774

Sequence ID dm3.chrX
Location 20,970,292 – 20,970,345
Length 53
Max. P 0.786466
window21739

overview

Window 9

Location 20,970,292 – 20,970,345
Length 53
Sequences 7
Columns 63
Reading direction reverse
Mean pairwise identity 93.35
Shannon entropy 0.13579
G+C content 0.35421
Mean single sequence MFE -13.39
Consensus MFE -11.21
Energy contribution -11.54
Covariance contribution 0.33
Combinations/Pair 1.11
Mean z-score -1.91
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.69
SVM RNA-class probability 0.786466
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20970292 53 - 22422827
AUAGUUUGCGAACAAAUUAAGCCCAC----------AUUGUGUCGUUAAUACAAUUAUUUGUC
.(((((((....))))))).......----------(((((((.....)))))))........ (  -6.50, z-score =  -0.37, R)
>droEre2.scaffold_4690 17536319 63 - 18748788
AUAGUUUGCGAACAAAUUAAGCCCACUUUGCAGUGAUUUGUGUCGCUAACACAAUUAUUUGUC
...(((.((((((((((((.((.......))..)))))))).)))).)))((((....)))). ( -15.20, z-score =  -2.29, R)
>droSec1.super_8 3253552 63 - 3762037
AUAGUUUGCGAACAAAUUAAACCCACUUUGCAGUGAUUUGUGUCGCUAACACAAUUAUUUGUC
...(((.((((((((((((....(.....)...)))))))).)))).)))((((....)))). ( -13.20, z-score =  -1.91, R)
>droSim1.chrX_random 5404598 63 - 5698898
AUAGUUUGCGAACAAAUUAAACCCACUUUGCAGUGAUUUGUGUCGCUAACACAAUUAUUUGUC
...(((.((((((((((((....(.....)...)))))))).)))).)))((((....)))). ( -13.20, z-score =  -1.91, R)
>droAna3.scaffold_13334 311727 63 + 1562580
AUAGUUUGCGAACAAAUUAAGCCCACUUUGCAGUGAUUUGUGUCGCUAACACAAUUAUUUGUC
...(((.((((((((((((.((.......))..)))))))).)))).)))((((....)))). ( -15.20, z-score =  -2.29, R)
>droVir3.scaffold_12970 4186849 63 + 11907090
AUAGUUUGCGAACAAAUUAAGCCCACUUUGCAGUGAUUUGUGUCGCUAACACAAUUAUUUGUC
...(((.((((((((((((.((.......))..)))))))).)))).)))((((....)))). ( -15.20, z-score =  -2.29, R)
>droMoj3.scaffold_6482 1942638 63 - 2735782
AUAGUUUGCGAACAAAUUAAGCCCACUUUGCAGUGAUUUGUGUCGCUAACACAAUUAUUUGUC
...(((.((((((((((((.((.......))..)))))))).)))).)))((((....)))). ( -15.20, z-score =  -2.29, R)
>consensus
AUAGUUUGCGAACAAAUUAAGCCCACUUUGCAGUGAUUUGUGUCGCUAACACAAUUAUUUGUC
...(((.((((((((((((..............)))))))).)))).)))((((....)))). (-11.21 = -11.54 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:39 2011