Locus 15772

Sequence ID dm3.chrX
Location 20,965,298 – 20,965,404
Length 106
Max. P 0.971858
window21736 window21737

overview

Window 6

Location 20,965,298 – 20,965,404
Length 106
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 86.38
Shannon entropy 0.23961
G+C content 0.54212
Mean single sequence MFE -39.22
Consensus MFE -26.24
Energy contribution -27.68
Covariance contribution 1.44
Combinations/Pair 1.18
Mean z-score -2.81
Structure conservation index 0.67
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.71
SVM RNA-class probability 0.962677
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20965298 106 + 22422827
---GCAGCAGCAUCAGCAAGCCGGUGUAAUCAACACGAUCUCUGGCAGCAUUCCGGCCACGGGAUUUAGUUCCCUGGCCGGCAGCUUUAGUGAUCUUCAGUUGAACAAC
---((....)).(((((......((((.....))))((((.((((.(((...(((((((.((((......)))))))))))..))))))).))))....)))))..... ( -42.40, z-score =  -4.09, R)
>droSim1.chrX 16123211 106 + 17042790
---GCAGCAGCAUCAGCAAGCUGGCCUAAUCAACACGAUCUCUGGCAGCAUUCCGGCCACGGGAUUUAGUUCCCUGGCCGGCAGCUUUAGUGAUCUUCAGUUGAACAAC
---.((((.((....))..))))......(((((..((((.((((.(((...(((((((.((((......)))))))))))..))))))).))))....)))))..... ( -42.50, z-score =  -3.96, R)
>droSec1.super_8 3252343 106 + 3762037
---GCAGCAGCAUCAGCAAGCUGGCCUAAUCAGCACGAUCUCUGGCAGCAUUCCGGCCACGGGAUUUAGUUCCCUGGCCGGCAGCUUUAGUGAUCUUCAGUUGAACAAC
---((....)).(((((..(((((.....)))))..((((.((((.(((...(((((((.((((......)))))))))))..))))))).))))....)))))..... ( -44.80, z-score =  -4.12, R)
>droYak2.chrX 20168670 109 + 21770863
GCAGCAGCAGCAUCAGCAAACUGGCCUGAUCAACACGAUCUCCGGCAGCAUUCCGGCCACGGGAUUCAGUUCUCUGGCCGGCAGCUUCAGUGAUCUGCAUUUGAACAAC
......((((.(((.....(((((((.((((.....))))...)))(((...(((((((.((((......)))))))))))..))).)))))))))))........... ( -39.40, z-score =  -2.34, R)
>droVir3.scaffold_12970 7717273 106 + 11907090
---GCAGCAACAUCUGCAGACUGGCGUCAUCAACACCAUUUCCGGCAGCAUUCCAGCAACUGGCUUUACAUCGCUGGCGGGCAGCUUUAGCGACUUGCAGCUAAACAAU
---..........((((....(((.((.....)).)))...(((.((((.....(((.....))).......)))).))))))).((((((........)))))).... ( -27.00, z-score =   0.46, R)
>consensus
___GCAGCAGCAUCAGCAAGCUGGCCUAAUCAACACGAUCUCUGGCAGCAUUCCGGCCACGGGAUUUAGUUCCCUGGCCGGCAGCUUUAGUGAUCUUCAGUUGAACAAC
....((((.......((......))...........((((.((((.(((...(((((((.((((......)))))))))))..))))))).))))....))))...... (-26.24 = -27.68 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 20,965,298 – 20,965,404
Length 106
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 86.38
Shannon entropy 0.23961
G+C content 0.54212
Mean single sequence MFE -40.32
Consensus MFE -32.98
Energy contribution -34.18
Covariance contribution 1.20
Combinations/Pair 1.24
Mean z-score -2.35
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.86
SVM RNA-class probability 0.971858
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20965298 106 - 22422827
GUUGUUCAACUGAAGAUCACUAAAGCUGCCGGCCAGGGAACUAAAUCCCGUGGCCGGAAUGCUGCCAGAGAUCGUGUUGAUUACACCGGCUUGCUGAUGCUGCUGC---
((...(((((....((((.((..(((..(((((((((((......)))).)))))))...)))...)).))))..)))))..))..((((..((....)).)))).--- ( -44.20, z-score =  -4.28, R)
>droSim1.chrX 16123211 106 - 17042790
GUUGUUCAACUGAAGAUCACUAAAGCUGCCGGCCAGGGAACUAAAUCCCGUGGCCGGAAUGCUGCCAGAGAUCGUGUUGAUUAGGCCAGCUUGCUGAUGCUGCUGC---
(((..(((((....((((.((..(((..(((((((((((......)))).)))))))...)))...)).))))..)))))...)))((((..((....)).)))).--- ( -45.20, z-score =  -4.04, R)
>droSec1.super_8 3252343 106 - 3762037
GUUGUUCAACUGAAGAUCACUAAAGCUGCCGGCCAGGGAACUAAAUCCCGUGGCCGGAAUGCUGCCAGAGAUCGUGCUGAUUAGGCCAGCUUGCUGAUGCUGCUGC---
(((..(((.(....((((.((..(((..(((((((((((......)))).)))))))...)))...)).))))..).)))...)))((((..((....)).)))).--- ( -41.00, z-score =  -2.53, R)
>droYak2.chrX 20168670 109 - 21770863
GUUGUUCAAAUGCAGAUCACUGAAGCUGCCGGCCAGAGAACUGAAUCCCGUGGCCGGAAUGCUGCCGGAGAUCGUGUUGAUCAGGCCAGUUUGCUGAUGCUGCUGCUGC
..((.((((.(((.((((.(((.(((..((((((((.((......)).).)))))))...)))..))).))))))))))).))(((.(((..((....)).)))))).. ( -37.80, z-score =  -0.91, R)
>droVir3.scaffold_12970 7717273 106 - 11907090
AUUGUUUAGCUGCAAGUCGCUAAAGCUGCCCGCCAGCGAUGUAAAGCCAGUUGCUGGAAUGCUGCCGGAAAUGGUGUUGAUGACGCCAGUCUGCAGAUGUUGCUGC---
........((.(((((((......((.((...((((((((.........))))))))...)).))((((..(((((((...))))))).))))..))).)))).))--- ( -33.40, z-score =   0.00, R)
>consensus
GUUGUUCAACUGAAGAUCACUAAAGCUGCCGGCCAGGGAACUAAAUCCCGUGGCCGGAAUGCUGCCAGAGAUCGUGUUGAUUAGGCCAGCUUGCUGAUGCUGCUGC___
(((..(((((....((((.((..(((..(((((((((((......)))).)))))))...)))...)).))))..)))))...)))((((..((....)).)))).... (-32.98 = -34.18 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:37 2011