| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,964,644 – 20,964,703 |
| Length | 59 |
| Max. P | 0.728910 |
| Location | 20,964,644 – 20,964,703 |
|---|---|
| Length | 59 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 91.69 |
| Shannon entropy | 0.14982 |
| G+C content | 0.43553 |
| Mean single sequence MFE | -8.68 |
| Consensus MFE | -8.40 |
| Energy contribution | -8.08 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20964644 59 - 22422827 AUAUUUUAUCUACGCUUUUGAUGGUCUCCAUCCAGCAGCAAUCCACGCCUGAUACCCAU ......((((...(((...(((((...))))).))).((.......))..))))..... ( -8.90, z-score = -1.28, R) >droEre2.scaffold_4690 17534662 58 - 18748788 AUAUUUUAUCUCCGCUUUUGAUGGGCUCCAUCCAACGGCAAUCCACGCCUGAUG-CCAU ...................(((((...)))))....((((.((.......))))-)).. ( -9.40, z-score = 0.38, R) >droYak2.chrX 20168014 59 - 21770863 AUAUUUUAUCUCUGCUUUUGAUGGUAUCCAUUCAACAGCAAUCCACACCUAAUGCCCAU ............((((.(((((((...))).)))).))))................... ( -8.70, z-score = -1.80, R) >droSec1.super_8 3251689 59 - 3762037 AUAUUUUAUCUACGCUUUUGAUGGUCUCCAUCCAACAGCAAUCCACGCCUCAUGCCCAU .............(((.(((((((...)))).))).))).................... ( -8.20, z-score = -1.53, R) >droSim1.chrX 16122548 59 - 17042790 AUAUUUUAUCUACGCUUUUGAUGGUCUCCAUCCAACAGCAAUCCACGCCUGAUGCCCAU .............(((.(((((((...)))).))).))).................... ( -8.20, z-score = -0.85, R) >consensus AUAUUUUAUCUACGCUUUUGAUGGUCUCCAUCCAACAGCAAUCCACGCCUGAUGCCCAU .............(((.(((((((...)))).))).))).................... ( -8.40 = -8.08 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:36 2011