| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,958,120 – 20,958,180 |
| Length | 60 |
| Max. P | 0.627822 |
| Location | 20,958,120 – 20,958,180 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 52.51 |
| Shannon entropy | 0.79747 |
| G+C content | 0.51932 |
| Mean single sequence MFE | -14.65 |
| Consensus MFE | -5.89 |
| Energy contribution | -5.95 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20958120 60 - 22422827 CACCUACGCUGACGAUACUGCUGUGCUCACGAAAAGUAAAAGUAUCCUGGCUGCCACUUC .......(((...((((((....((((.......))))..))))))..)))......... ( -10.80, z-score = -0.51, R) >dp4.Unknown_group_5 52968 58 + 59981 --CAUUUGCCGACGGCUCAGCAAUACUCUCGAGGGCUAGCUGUGUCUAUAAUGCCACAAA --((((.....((((((.(((....((....)).)))))))))......))))....... ( -11.50, z-score = 0.44, R) >droPer1.super_51 23457 55 - 524598 --CAUUUGCUGACGACACAGCAGAACUCUCGAGGGCUAGCUGUGUCU---AUGCCACAGA --.....((....((((((((((..((....))..)).)))))))).---..))...... ( -18.70, z-score = -1.88, R) >droGri2.scaffold_7336 2291 60 - 4216 UACACGCGCGGACGACAUUGUGUUCGUUGCUAACUCCACCAUUGCUUGGAGAGCAGCUGC .....(((((((((......)))))))((((..(((((........)))))))))))... ( -17.60, z-score = -0.82, R) >consensus __CAUUCGCUGACGACACAGCAGUACUCUCGAAGGCUAGCAGUGUCU_GAAUGCCACAGA .......((....((((((((....((.....))....))))))))......))...... ( -5.89 = -5.95 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:35 2011