| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,936,423 – 20,936,537 |
| Length | 114 |
| Max. P | 0.941552 |
| Location | 20,936,423 – 20,936,537 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 94.82 |
| Shannon entropy | 0.09435 |
| G+C content | 0.45649 |
| Mean single sequence MFE | -33.00 |
| Consensus MFE | -28.28 |
| Energy contribution | -29.52 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.941552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20936423 114 + 22422827 UCGCUUGACAUUGAGUCAGCAUUACGGUCAAGGCGAAUAUCACUUGAUCGUAUUUUUAGACUCACGCACUUGUCGUUAGUAAUGCGGCCUAGAGGCCCAAAUUCCCGUGAAUCA ((((..((((.((((((.....((((((((((..........))))))))))......))))))......))))........((.((((....)))))).......)))).... ( -35.10, z-score = -2.72, R) >droSim1.chrX 16094190 114 + 17042790 UCGCUUGACAUUGAGUCAGCAUUACGGUCAAGGCGAAUAUCACUAGAUCGUAUUUUUAGAUUCACGCACUUGUCGUUAGUAAUGCGGCCUAGAGGCCCAAAUCCCCGUGAAUCA ..(((.(((.....))))))..(((((((.((..........)).)))))))......((((((((((.(((.(....)))))))((((....)))).........))))))). ( -34.30, z-score = -2.73, R) >droSec1.super_8 3224534 114 + 3762037 UCGCUUGACAUUGAGUCAGCAUUACGGUCAAGGCGAAUAUCACUAGAUCGUAUUUUUAGAUUCACGCACUUGGCGUUAGUAAUGCGGCCUAGAGGCCCAAAUCCCCGUGAAUCA ..(((.(((.....))))))..(((((((.((..........)).)))))))......((((((((......((((.....))))((((....))))........)))))))). ( -36.00, z-score = -2.82, R) >droYak2.chrX 20144066 114 + 21770863 UCGCUUGACAUUGAGCCAGCAUUACGGUCAAGGCGAAUAUCACUAGAUCGUAUUUUUAGAUUCACGCACUUGUCGUUAGUAAUGCGGCCUAGAGGCCCAAAUCCCCGUGAAUCA ..((((......))))......(((((((.((..........)).)))))))......((((((((((.(((.(....)))))))((((....)))).........))))))). ( -31.20, z-score = -1.69, R) >droEre2.scaffold_4690 17508012 109 + 18748788 UCGCUUAACAUU-----AGCAUUACGGUCAAGGCGAAUAUCACCAGAUCGUAUUUUUAGAUUCACACACUGGUCGUUAGUAAUGCGGCUUAGAGGCCCAAAUCCCCGUGAAUCA ..(((.......-----)))..(((((((..((.(.....).)).)))))))......(((((((...((((((((.......))))).))).((.........))))))))). ( -28.40, z-score = -2.23, R) >consensus UCGCUUGACAUUGAGUCAGCAUUACGGUCAAGGCGAAUAUCACUAGAUCGUAUUUUUAGAUUCACGCACUUGUCGUUAGUAAUGCGGCCUAGAGGCCCAAAUCCCCGUGAAUCA ..(((.(((.....))))))..(((((((.((..........)).)))))))......((((((((.(((.......)))..((.((((....))))))......)))))))). (-28.28 = -29.52 + 1.24)
| Location | 20,936,423 – 20,936,537 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 94.82 |
| Shannon entropy | 0.09435 |
| G+C content | 0.45649 |
| Mean single sequence MFE | -33.92 |
| Consensus MFE | -30.90 |
| Energy contribution | -31.26 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20936423 114 - 22422827 UGAUUCACGGGAAUUUGGGCCUCUAGGCCGCAUUACUAACGACAAGUGCGUGAGUCUAAAAAUACGAUCAAGUGAUAUUCGCCUUGACCGUAAUGCUGACUCAAUGUCAAGCGA .((((((((...(((((((((....))))......(....).))))).))))))))......((((.(((((((.....)).))))).)))).(((((((.....))).)))). ( -38.10, z-score = -3.32, R) >droSim1.chrX 16094190 114 - 17042790 UGAUUCACGGGGAUUUGGGCCUCUAGGCCGCAUUACUAACGACAAGUGCGUGAAUCUAAAAAUACGAUCUAGUGAUAUUCGCCUUGACCGUAAUGCUGACUCAAUGUCAAGCGA .(((((((.........((((....))))(((((.(....)...))))))))))))......((((.((..(((.....)))...)).)))).(((((((.....))).)))). ( -34.80, z-score = -2.37, R) >droSec1.super_8 3224534 114 - 3762037 UGAUUCACGGGGAUUUGGGCCUCUAGGCCGCAUUACUAACGCCAAGUGCGUGAAUCUAAAAAUACGAUCUAGUGAUAUUCGCCUUGACCGUAAUGCUGACUCAAUGUCAAGCGA .(((((((.........((((....))))(((((.(....)...))))))))))))......((((.((..(((.....)))...)).)))).(((((((.....))).)))). ( -34.80, z-score = -2.14, R) >droYak2.chrX 20144066 114 - 21770863 UGAUUCACGGGGAUUUGGGCCUCUAGGCCGCAUUACUAACGACAAGUGCGUGAAUCUAAAAAUACGAUCUAGUGAUAUUCGCCUUGACCGUAAUGCUGGCUCAAUGUCAAGCGA .(((((((.........((((....))))(((((.(....)...))))))))))))......((((.((..(((.....)))...)).)))).(((((((.....))).)))). ( -34.20, z-score = -1.76, R) >droEre2.scaffold_4690 17508012 109 - 18748788 UGAUUCACGGGGAUUUGGGCCUCUAAGCCGCAUUACUAACGACCAGUGUGUGAAUCUAAAAAUACGAUCUGGUGAUAUUCGCCUUGACCGUAAUGCU-----AAUGUUAAGCGA .((((((((.((.(((((....))))))).)..((((.......)))).)))))))......((((.((.((((.....))))..)).)))).((((-----.......)))). ( -27.70, z-score = -0.90, R) >consensus UGAUUCACGGGGAUUUGGGCCUCUAGGCCGCAUUACUAACGACAAGUGCGUGAAUCUAAAAAUACGAUCUAGUGAUAUUCGCCUUGACCGUAAUGCUGACUCAAUGUCAAGCGA .(((((((.........((((....))))(((((.(....)...))))))))))))......((((.((..(((.....)))...)).)))).(((((((.....))).)))). (-30.90 = -31.26 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:30 2011