Locus 15765

Sequence ID	dm3.chrX
Location	20,931,333 – 20,931,425
Length	92
Max. P	0.833487

overview

Window 6

Location	20,931,333 – 20,931,425
Length	92
Sequences	4
Columns	92
Reading direction	reverse
Mean pairwise identity	84.26
Shannon entropy	0.24968
G+C content	0.33967
Mean single sequence MFE	-20.43
Consensus MFE	-14.57
Energy contribution	-14.95
Covariance contribution	0.38
Combinations/Pair	1.26
Mean z-score	-2.12
Structure conservation index	0.71
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.84
SVM RNA-class probability	0.833487
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20931333 92 - 22422827
AAUGCGAUAGUAAUUGGCUUUGGCAAUUUAUUAAUUAACUAUUAAUGGAUAUUGCAACACCAACAGUAAAGCCCCGCUGUGAACUCUUACAG
..(((....)))...((((((.(((((((((((((.....))))))))))..))).((.......))))))))...((((((....)))))) ( -17.80, z-score =  -0.87, R)
>droYak2.chrX 20139483 88 - 21770863
AAUGCGAUGGUAAUUAGCUACGCCAGUUCAUUAAUUAAUUGUUAAUAAUAAUUGCAAC----ACGGUUAAGUCCCGUUGUGAAUCUUUUCAG
...(((((((...((((((....(((((.((((((.....))))))...)))))....----..))))))...)))))))(((....))).. ( -15.50, z-score =  -0.66, R)
>droSec1.super_8 3219899 88 - 3762037
AAUGCGAGAGUAAUUAGCUUGGGCAAUUUAUUAAUUAACUAUUAAUGGAUAUUGCAAC----ACAGUAAAGCCCAGUUGUGAACUUUUUCAG
..((.((((((...(((((.((((.((((((((((.....)))))))))).((((...----...)))).)))))))))...)))))).)). ( -24.20, z-score =  -3.48, R)
>droSim1.chrX_random 625481 88 - 5698898
AAUGCGAGAGUAAUUAGCUUGGGCAAUUUAUUAAUUAACUAUUAAUGGAUAUUGCAAC----ACAGUAAAGCCCAGUUGUGAACUUUUUCAG
..((.((((((...(((((.((((.((((((((((.....)))))))))).((((...----...)))).)))))))))...)))))).)). ( -24.20, z-score =  -3.48, R)
>consensus
AAUGCGAGAGUAAUUAGCUUGGGCAAUUUAUUAAUUAACUAUUAAUGGAUAUUGCAAC____ACAGUAAAGCCCAGUUGUGAACUUUUUCAG
..((.((((((...(((((.((((..(((((((((.....)))))))))(((((.........)))))..)))))))))...)))))).)). (-14.57 = -14.95 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:28 2011