| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,856,067 – 20,856,160 |
| Length | 93 |
| Max. P | 0.758410 |
| Location | 20,856,067 – 20,856,160 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 85.35 |
| Shannon entropy | 0.19748 |
| G+C content | 0.45038 |
| Mean single sequence MFE | -25.34 |
| Consensus MFE | -22.45 |
| Energy contribution | -22.24 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20856067 93 - 22422827 GGUGGUACAAUGGGUCGUAUGCGUAUUCUUCUGCGCGUUACUCAUACGACGCAUGAGAGCCAUAACUUUUUGUAAACUUUGAAAUUGAAUUCU .(((((.(.(((.((((((((.(((.............))).)))))))).)))..).))))).............................. ( -23.42, z-score = -1.44, R) >droSec1.super_8 3139021 87 - 3762037 GGUGGUACAAUGGGUCGUAUGCGUAUUCUUCUGCGCGUUACUCAU---ACGCAGGGGAGCCAUAACUUUUUGUGCAUCAUUGAACAGUGA--- ....((((((..(((..((((.((..(((((((((..(.....).---.))))))))))))))))))..)))))).(((((....)))))--- ( -26.30, z-score = -1.38, R) >droSim1.chrX 16025646 87 - 17042790 GGUGGUACAAUGGGUCGUAUGCGUAUUCUUCUGCGCGUUACUCAU---ACGCAGGGGAGCCAUAACUUUUUGUGCAUCAUUGAACAGUGA--- ....((((((..(((..((((.((..(((((((((..(.....).---.))))))))))))))))))..)))))).(((((....)))))--- ( -26.30, z-score = -1.38, R) >consensus GGUGGUACAAUGGGUCGUAUGCGUAUUCUUCUGCGCGUUACUCAU___ACGCAGGGGAGCCAUAACUUUUUGUGCAUCAUUGAACAGUGA___ ((((.(((((..(((..((((.((..(((((((((..............))))))))))))))))))..)))))))))............... (-22.45 = -22.24 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:23 2011