Locus 15760

Sequence ID dm3.chrX
Location 20,854,081 – 20,854,187
Length 106
Max. P 0.700461
window21719

overview

Window 9

Location 20,854,081 – 20,854,187
Length 106
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 63.51
Shannon entropy 0.52372
G+C content 0.29533
Mean single sequence MFE -14.20
Consensus MFE -7.88
Energy contribution -8.00
Covariance contribution 0.12
Combinations/Pair 1.25
Mean z-score -1.15
Structure conservation index 0.55
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.45
SVM RNA-class probability 0.700461
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20854081 106 - 22422827
-------UUCAAAAAUAUAUAUCGAA-CAUUUUCUUACU-----CCAUAUUGUAAUUUUCACGCUUAUAUUUGAAAGGCAUACAUUGCCUAUUUGUGUCUU-AAGCACAUUUAUUUUAAG
-------((((((.(((......(((-....)))((((.-----.......))))..........))).))))))(((((.....)))))...(((((...-..)))))........... ( -15.00, z-score =  -1.63, R)
>droYak2.chrX 20065587 119 - 21770863
-AUCCAAUUUAACUACUGAUCUUUAUCCGUGUUGUUCUUUUCUACUAGAUCAUUCAUUCCACACUUAAAUUUAAAAGGCAUGCAUUGCCGACAUUUGUCUUAAAACAGACUUAUUGUAAG
-..............(((..........((((((.(((........))).))........)))).....(((((..((((.....))))(((....)))))))).)))............ ( -14.80, z-score =  -0.40, R)
>droEre2.scaffold_4690 17427595 119 - 18748788
UUAUAUUUUAUACACCGCACAUUUAACCAUUUUCCUGUUUUUUGCCAGAUUAUUAAUUUCACAUUAGU-CUUGAAAGGCAUACAUUGCCCACAUUUGUCUUAAAACACACUUAUUUUCAG
...................................((((((..(.(((((......(((((.......-..)))))((((.....))))...))))).)..))))))............. ( -12.80, z-score =  -1.41, R)
>consensus
_______UUAAACAACACAUAUUUAACCAUUUUCUUAUUUU_U_CCAGAUUAUUAAUUUCACACUUAUAUUUGAAAGGCAUACAUUGCCCACAUUUGUCUUAAAACACACUUAUUUUAAG
.....................................................................(((((((((((.....))))....(((((......)))))....))))))) ( -7.88 =  -8.00 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:23 2011