| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,192,701 – 12,192,799 |
| Length | 98 |
| Max. P | 0.774298 |
| Location | 12,192,701 – 12,192,799 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 83.33 |
| Shannon entropy | 0.31708 |
| G+C content | 0.49203 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -12.30 |
| Energy contribution | -12.67 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12192701 98 + 23011544 CCCCCCUCCCCCGAAUAUCCUGCCAACCGACCAACUAUGGCACUUCAUUUGCUCCACUCAAGUGGAUCCACUUUCAUUUGUUUGCGUUGGCAAAAAAA ....................((((((((((.(((..((((((.......)))(((((....)))))........)))))).))).)))))))...... ( -22.00, z-score = -2.92, R) >droPer1.super_1 2826985 85 - 10282868 -------CGCCCCAACCUGCUGCCCACC---CAACUAUGGCACUUCAUUUGCUGCGCUCAAGUGGAUCCACUUUCAUUUGUUUGCGUUGGGCAAC--- -------.((........))((((((..---.......((((.......))))((((.((((((((......))))))))...))))))))))..--- ( -25.00, z-score = -1.78, R) >dp4.chr4_group3 5724204 88 - 11692001 -------CGCCCCAACCUGCUGCCCACC---CAACUAUGGCACUUCAUUUGCUGCGCUCAAGUGGAUCCACUUUCAUUUGUUUGCGUUGGGCAACAAA -------..........((.((((((..---.......((((.......))))((((.((((((((......))))))))...)))))))))).)).. ( -25.90, z-score = -1.88, R) >droAna3.scaffold_12916 2992519 79 - 16180835 ---------------CCUCCUGCCAACC----AACUAUGGCACUUCAUUUGCUGCGCUCAAGUGGAUCCACUUUCAUUUGUUUGCUCUGGGCAAAAAC ---------------.....(((((...----.....))))).....(((((((((..((((((((......))))))))..)))....))))))... ( -21.20, z-score = -2.20, R) >droEre2.scaffold_4929 13421785 88 - 26641161 ------CCCCCCGCAUAUCCUGCCAACC----AACUAUGGCACUUCAUUUGCAGCGCUCAAGUGGAUCCACUUUCAUUUGUUUGCCUUGGCAAAAAAA ------..............(((((...----.....))))).....(((((.(((..((((((((......))))))))..)))....))))).... ( -21.00, z-score = -1.73, R) >droYak2.chr2L 8623568 88 + 22324452 ------CCCCCCGCAUAUCCUGCCAACC----AACUAUGGCACUUCAUUUGCUGCGCUCAAGUGGAUCCACUUUCAUUUGUUUGCCUUUGCAAAAAAA ------..............(((((...----.....))))).....(((((.(((..((((((((......))))))))..)))....))))).... ( -20.60, z-score = -2.54, R) >droSec1.super_16 388515 94 + 1878335 ----CCCCCUCCGAAUAUCCUGCCAACCGACCAACUAUGGCACUUCAUUUGCUCCGCUCAAGUGGAUCCACUUUCAUUUGUUUGCGUUGGCAAAAAAA ----................(((((((.(.(((....))))..............((.((((((((......))))))))...)))))))))...... ( -22.30, z-score = -2.64, R) >droSim1.chr2L 11993536 98 + 22036055 CUACCCCCCUCCGAAUAUCCUGCCAACCGACCAACUAUGGCACUUCAUUUGCUCCGCUCAAGUGGAUCCACUUUCAUUUGUUUGCGUUGGCAAAAAAA ....................(((((((.(.(((....))))..............((.((((((((......))))))))...)))))))))...... ( -22.30, z-score = -2.72, R) >consensus ______CCCCCCGAAUAUCCUGCCAACC___CAACUAUGGCACUUCAUUUGCUGCGCUCAAGUGGAUCCACUUUCAUUUGUUUGCGUUGGCAAAAAAA ....................(((((............))))).............((.((((((((......))))))))...))............. (-12.30 = -12.67 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:36 2011