| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,817,601 – 20,817,656 |
| Length | 55 |
| Max. P | 0.587379 |
| Location | 20,817,601 – 20,817,656 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 87.64 |
| Shannon entropy | 0.22456 |
| G+C content | 0.42182 |
| Mean single sequence MFE | -11.83 |
| Consensus MFE | -10.06 |
| Energy contribution | -9.98 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20817601 55 - 22422827 AAGGGCAGCAGCAACAAAAGAACGGCAUAAUUUGUGCCAUAUCAAAAAUAGUUGC ..........(((((........(((((.....))))).(((.....)))))))) ( -10.80, z-score = -1.11, R) >droYak2.chrX 20031895 55 - 21770863 AGGGGCAGCAGCAACAAAAGAGCGGCAUAAUUUGUGCCAUAUCAAAAAUAGUUGC ....(((((.((.........))(((((.....)))))............))))) ( -13.40, z-score = -1.73, R) >droSec1.super_8 3091404 55 - 3762037 AAGGGCAGCAGCAACAAACGAACGGCAUAAUUUGUGCCAUAUCAAAAAUAGUUGC ..........(((((........(((((.....))))).(((.....)))))))) ( -10.80, z-score = -0.89, R) >droSim1.chrX 15986355 55 - 17042790 AAGGGCAGCAGCAACAAAGGAACGGCAUAAUUUGUGCCAUAUCAAAAAUAGUUGC .......(((((.......((..(((((.....)))))...)).......))))) ( -11.54, z-score = -1.29, R) >dp4.chrXL_group1e 9463446 55 - 12523060 AAGGCUGGGAGCCACAAAGGAAAGGCAUCCUUUCAGUCAUAUAAAAAAUAGUGGC ..(((((((((((..........))).)))...)))))................. ( -12.60, z-score = -1.38, R) >consensus AAGGGCAGCAGCAACAAAAGAACGGCAUAAUUUGUGCCAUAUCAAAAAUAGUUGC ..........(((((........(((((.....))))).(((.....)))))))) (-10.06 = -9.98 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:14 2011