| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,811,818 – 20,811,893 |
| Length | 75 |
| Max. P | 0.893316 |
| Location | 20,811,818 – 20,811,893 |
|---|---|
| Length | 75 |
| Sequences | 3 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 54.59 |
| Shannon entropy | 0.66327 |
| G+C content | 0.49699 |
| Mean single sequence MFE | -17.03 |
| Consensus MFE | -8.02 |
| Energy contribution | -8.80 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893316 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20811818 75 + 22422827 CCGCCACUCGCACUCUACGUCCACCCGAUAAACACUCGGUACUCU-AGGCACCCCGUUUUUUUUGACACCCUACUU- ..(((....(.((.....)).)..((((.......))))......-.))).....(((......))).........- ( -9.20, z-score = -0.44, R) >droSim1.chr3R 14468448 59 - 27517382 AAGCCACUGGCACUUUAAGUGCACCCGCUAAACACUGGGUGUUUUCUGACACUCUAAUU------------------ .(((.....((((.....))))....))).......(((((((....))))))).....------------------ ( -15.80, z-score = -1.99, R) >droMoj3.scaffold_3993 2380 76 + 10554 AAGCCACCGGUACUGAAGGUGCACCGGGUAAAUGUUGGGUGAUUU-UGACACCCGGGUGUUUUCAAACACCGUACAA .......((((..((((((..(.((((((....((..((....))-..)))))))))..))))))...))))..... ( -26.10, z-score = -1.11, R) >consensus AAGCCACUGGCACUCUAAGUGCACCCGAUAAACACUGGGUGAUUU_UGACACCCCGAUUUUUU__A___CC______ .........((((.....))))..............(((((((....)))))))....................... ( -8.02 = -8.80 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:13 2011