| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,800,913 – 20,801,003 |
| Length | 90 |
| Max. P | 0.942801 |
| Location | 20,800,913 – 20,801,003 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 77.54 |
| Shannon entropy | 0.36182 |
| G+C content | 0.45402 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -17.45 |
| Energy contribution | -19.57 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.942801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20800913 90 + 22422827 ---UUGGGUGUUGCAAGUAUAUGCUGCCUUCCUUAAGUGAGGGAGUCCCUUUUUUUUGGUGGGUGUAUGUGCUUGCCACAUGAUGACACUUAG ---.((((((((((((((((((((.((((.((..(((.(((((...))))).)))..)).))))))))))))))))........)))))))). ( -37.20, z-score = -4.58, R) >droEre2.scaffold_4690 1298528 92 - 18748788 AUUUUGGGUGUUGCAAGCUUAUGGUGCCUUCCUUGAGCGAGGGUGUCCCUUUUUUUGG-UGGGUGUAUGUGCUUGCCACAUGAUGACACUUUG .......((((.((((((.(((.(..(((.((..(((.(((((...))))))))..))-.)))..)))).)))))).))))............ ( -29.00, z-score = -1.59, R) >droYak2.chrX 1681904 92 - 21770863 ACUUUGGGUGUUGCAAGUUUAUGCUGCCUUUCUUGAGUGAGGAUGUUCCUUUUUUUUG-UGGGUGUAUGUGCUUGCCACAUGAUGACACUUAG ....((((((((((((((.(((((.((((..(..(((.((((.....)))).)))..)-.))))))))).))))))........)))))))). ( -28.20, z-score = -2.69, R) >droSim1.chrX 1004990 72 - 17042790 ----------UUGCAAGUUUAUGCUGACUUCCUUGAGUGCCUCACUCCCUUUUUUUGG-UGGGUGUUUGUGCAUGCCACAUGA---------- ----------..(((((((......)))))......(((((.(((((((.......))-.)))))...).)))))).......---------- ( -15.50, z-score = 0.11, R) >consensus ___UUGGGUGUUGCAAGUUUAUGCUGCCUUCCUUGAGUGAGGGAGUCCCUUUUUUUGG_UGGGUGUAUGUGCUUGCCACAUGAUGACACUUAG .......((((.((((((.(((((.((((.....(((.((((.....)))).))).....))))))))).)))))).))))............ (-17.45 = -19.57 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:12 2011