| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,191,956 – 12,192,047 |
| Length | 91 |
| Max. P | 0.712107 |
| Location | 12,191,956 – 12,192,047 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 89.88 |
| Shannon entropy | 0.17954 |
| G+C content | 0.48911 |
| Mean single sequence MFE | -18.30 |
| Consensus MFE | -14.06 |
| Energy contribution | -14.46 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.712107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12191956 91 - 23011544 CUCGUGCCACACCCACCAAUCUUAUUUUCCAGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCGCUUCUUGU ...(((.((......................((((((((....))))))))...(((((.......))))).......)).)))....... ( -17.40, z-score = -1.81, R) >droEre2.scaffold_4929 13420874 90 + 26641161 -GGCUGCCACUCCCACCCAGCUUAUUUUCCCGCACGACGUCAUCGUUGUGUACUAAGCGUUAUUUUCGCCUUGCUACUUGCCGCUCCUUGU -(((.((........................((((((((....)))))))).....(((.......)))...)).....)))......... ( -18.30, z-score = -1.30, R) >droYak2.chr2L 8622749 89 - 22324452 -AGCUGCCAGUCCCACCAACCUCA-UUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCGCUCCUUGU -(((.((.(((..((.........-......((((((((....))))))))...(((((.......)))))))..))).)).)))...... ( -22.10, z-score = -3.46, R) >droSec1.super_16 387446 91 - 1878335 CUUGUACCACUACGACCAACCUUAUUUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCGCUCCUUGU .(((((....)))))................((((((((....))))))))...(((((.......))))).((.....)).......... ( -16.20, z-score = -1.46, R) >droSim1.chr2L 11992822 91 - 22036055 CUCGUACCACUACGACCAACCUUAUUUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUCUGCUACUUGCCGCUCCUUGU .(((((....)))))................((((((((....))))))))....((((.......))))..((.....)).......... ( -17.50, z-score = -1.82, R) >consensus CUCGUGCCACUCCCACCAACCUUAUUUUCCCGCACGACGUCAUCGUUGUGUAUUAAGCGUUAUUUUCGCUUUGCUACUUGCCGCUCCUUGU ...............................((((((((....))))))))...(((((.......))))).((.....)).......... (-14.06 = -14.46 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:35 2011