| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,788,965 – 20,789,068 |
| Length | 103 |
| Max. P | 0.549107 |
| Location | 20,788,965 – 20,789,068 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 73.37 |
| Shannon entropy | 0.47657 |
| G+C content | 0.55470 |
| Mean single sequence MFE | -26.50 |
| Consensus MFE | -12.02 |
| Energy contribution | -12.02 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20788965 103 + 22422827 CAU-CGACAAGAACAACAACAGCAACUUCGGAUGCUAUUAAACAAGCGAGCAGAGGGGCGUGGCACCA-GCCCACUGUCCGCCACCCUCCGCCCCAUUUUCCACG ...-................((((.(....).)))).........(((..(((..((((.((....))-)))).)))..)))....................... ( -25.80, z-score = -1.19, R) >droSim1.chrX_random 407622 103 + 5698898 CAU-CGACAAGAACAACAACAGCAACUUCGGAUGCUAUUAAACAAGCGAGCUGAGGGGCGUGGCACCA-GCCCACUGUCCGCCACCCUCCGCCCCACUUUCCACG ...-.((.(((........((((..(....).((((........)))).)))).((((((((((..((-(....)))...))))).....))))).))))).... ( -29.90, z-score = -2.27, R) >droSec1.super_8 3051036 103 + 3762037 CAU-CGACAAGAACAACAACAGCAACUUCGGAUGCUAUUAAACAAGCGAGCUGAGGGGCGUGGCACCA-GCCCACUGUCCGCCACCCUCCGCCCCAUUUUCCACG ...-...............((((..(....).((((........)))).)))).((((((((((..((-(....)))...))))).....))))).......... ( -29.30, z-score = -2.11, R) >droYak2.chrX 20005453 89 + 21770863 CAU-CGACAAGAACAACAACAGCAACUUCGGAUGCUAUUAAACAAGCGAGCAGAGGGGCGUGGCACCA-GCCCACCGCCUCUUCUUGCCCG-------------- ...-................((((.(....).)))).........(((((.(((((((.(.(((....-)))).)).))))).)))))...-------------- ( -29.50, z-score = -3.04, R) >droEre2.scaffold_4690 17370610 90 + 18748788 CAU-CGACAAGAACAACAACAGCAACUUCGGAUGCUAUUAAACAAGCGAGCAGAGGGGCGUGGCACCCCGUCCACCGCCUCAUUUUCCCAG-------------- ...-................((((.(....).))))................((((.(.(((((.....).))))).))))..........-------------- ( -20.20, z-score = -0.60, R) >droAna3.scaffold_13334 125157 81 - 1562580 UAUACUAUAGGCUAUAUAGCUAUAGCUAUGGAUGCUAUUUAACAAGCG-GCCAAGGGGCGUGGCACCACCUCCUCCUCCUCC----------------------- .........((((.((((((....))))))...(((........))))-))).(((((.(((....))))))))........----------------------- ( -24.30, z-score = -0.75, R) >consensus CAU_CGACAAGAACAACAACAGCAACUUCGGAUGCUAUUAAACAAGCGAGCAGAGGGGCGUGGCACCA_GCCCACCGCCCCCCACCCUCCG______________ .........................(((.(..((((........))))..).)))((((((((........)))).))))......................... (-12.02 = -12.02 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:07 2011