| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,768,229 – 20,768,293 |
| Length | 64 |
| Max. P | 0.755158 |
| Location | 20,768,229 – 20,768,293 |
|---|---|
| Length | 64 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 86.68 |
| Shannon entropy | 0.23394 |
| G+C content | 0.44576 |
| Mean single sequence MFE | -15.60 |
| Consensus MFE | -12.36 |
| Energy contribution | -12.80 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20768229 64 - 22422827 -CCGGUUGGACAUUCCUCGGACCAAGUCAUGCUUAGGAAGUACACUAAGCAAAA-AAGCGGAAAUG -((((((.((......)).))))......(((((((........)))))))...-....))..... ( -18.10, z-score = -2.42, R) >droSim1.chrX_random 5384258 66 - 5698898 CCGGGUUGGACAUUCCUCGGACCAAGUCAUGCUUAGGAAUUACACUAAGCAAAAUAAGCGGAAAUG (((((((.((......)).))))......(((((((........))))))).......)))..... ( -19.70, z-score = -3.03, R) >droSec1.super_8 3030310 65 - 3762037 -CCGGUUGGACAUUCCUCGGACCAAGUCAUGCUUAGGAAUUACACUAAGCAAAAUAAGCGGAAAUG -((((((.((......)).))))......(((((((........)))))))........))..... ( -18.10, z-score = -2.75, R) >droYak2.chrX 19983755 64 - 21770863 -UCGGUUGGACAUUCCUCAGACCAAGUCGUGCUUAGAAAAUACAGUAAGCAAAAU-AGUGGAAAAG -...........((((.(.(((...))).((((((..........))))))....-.).))))... ( -9.60, z-score = -0.15, R) >droEre2.scaffold_4690 17349989 64 - 18748788 -UCGGCUGGACAUUCCUCAGAGCAAAUCAUGCUUGGAAAGUACACUAAGCAAAA-AAGCGUGAAGG -((((((((.....)).............(((((((........)))))))...-.))).)))... ( -12.50, z-score = -0.29, R) >consensus _CCGGUUGGACAUUCCUCGGACCAAGUCAUGCUUAGGAAGUACACUAAGCAAAAUAAGCGGAAAUG ...((((.((......)).))))......(((((((........)))))))............... (-12.36 = -12.80 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:01 2011