| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,767,718 – 20,767,803 |
| Length | 85 |
| Max. P | 0.717875 |
| Location | 20,767,718 – 20,767,803 |
|---|---|
| Length | 85 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 98.36 |
| Shannon entropy | 0.02808 |
| G+C content | 0.35918 |
| Mean single sequence MFE | -18.12 |
| Consensus MFE | -14.26 |
| Energy contribution | -14.10 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20767718 85 + 22422827 AUUGUAUAACGUUU-GGCCAAAAAACCAAAUCGAAUAUGCCCAUUUUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAA .((((....(((((-((........))))).))..(((((......((((((.......)))))).....))))).......)))) ( -18.00, z-score = -2.18, R) >droYak2.chrX 19983228 86 + 21770863 AUUGUAUAACGUUUUGGCCAAAAAACCAAAUCGAAUAUGCCCAUUUUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAA .((((....((.(((((........))))).))..(((((......((((((.......)))))).....))))).......)))) ( -18.60, z-score = -2.44, R) >droEre2.scaffold_4690 17349470 85 + 18748788 AUUGUACAACGUUU-GGCCAAAAAACCAAAUCGAAUAUGCCCAUUUUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAA (((((((..(((((-((........))))).)).............((((((.......)))))).....)))))))......... ( -19.40, z-score = -2.68, R) >droSec1.super_8 3029766 85 + 3762037 AUUGUAUAACGUUU-GGCCAAAAAACCAAAUCGAAUAUGCCCAUUCUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAA .((((....(((((-((........))))).))..(((((......((((((.......)))))).....))))).......)))) ( -17.30, z-score = -2.20, R) >droSim1.chrX_random 5383714 85 + 5698898 AUUGUAUAACGUUU-GGCCAAAAAACCAAAUCGAAUAUGCCCAUUCUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAA .((((....(((((-((........))))).))..(((((......((((((.......)))))).....))))).......)))) ( -17.30, z-score = -2.20, R) >consensus AUUGUAUAACGUUU_GGCCAAAAAACCAAAUCGAAUAUGCCCAUUUUGGCCAAAUCCAAUGGCCAUCAAAGUAUAAUAACCAACAA (((((((..((.((.((........)).)).)).............((((((.......)))))).....)))))))......... (-14.26 = -14.10 + -0.16)
| Location | 20,767,718 – 20,767,803 |
|---|---|
| Length | 85 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 98.36 |
| Shannon entropy | 0.02808 |
| G+C content | 0.35918 |
| Mean single sequence MFE | -23.66 |
| Consensus MFE | -19.84 |
| Energy contribution | -19.84 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20767718 85 - 22422827 UUGUUGGUUAUUAUACUUUGAUGGCCAUUGGAUUUGGCCAAAAUGGGCAUAUUCGAUUUGGUUUUUUGGCC-AAACGUUAUACAAU (((((((((((((.....)))))))))((((((.((.((.....)).)).))))))(((((((....))))-)))......)))). ( -23.60, z-score = -2.30, R) >droYak2.chrX 19983228 86 - 21770863 UUGUUGGUUAUUAUACUUUGAUGGCCAUUGGAUUUGGCCAAAAUGGGCAUAUUCGAUUUGGUUUUUUGGCCAAAACGUUAUACAAU (((((((((((((.....)))))))))((((((.((.((.....)).)).))))))(((((((....))))))).......)))). ( -23.90, z-score = -2.40, R) >droEre2.scaffold_4690 17349470 85 - 18748788 UUGUUGGUUAUUAUACUUUGAUGGCCAUUGGAUUUGGCCAAAAUGGGCAUAUUCGAUUUGGUUUUUUGGCC-AAACGUUGUACAAU (((((((((((((.....)))))))))((((((.((.((.....)).)).))))))(((((((....))))-)))......)))). ( -23.60, z-score = -1.88, R) >droSec1.super_8 3029766 85 - 3762037 UUGUUGGUUAUUAUACUUUGAUGGCCAUUGGAUUUGGCCAGAAUGGGCAUAUUCGAUUUGGUUUUUUGGCC-AAACGUUAUACAAU (((((((((((((.....)))))))))((((((.((.((.....)).)).))))))(((((((....))))-)))......)))). ( -23.60, z-score = -2.17, R) >droSim1.chrX_random 5383714 85 - 5698898 UUGUUGGUUAUUAUACUUUGAUGGCCAUUGGAUUUGGCCAGAAUGGGCAUAUUCGAUUUGGUUUUUUGGCC-AAACGUUAUACAAU (((((((((((((.....)))))))))((((((.((.((.....)).)).))))))(((((((....))))-)))......)))). ( -23.60, z-score = -2.17, R) >consensus UUGUUGGUUAUUAUACUUUGAUGGCCAUUGGAUUUGGCCAAAAUGGGCAUAUUCGAUUUGGUUUUUUGGCC_AAACGUUAUACAAU ..(((((((((((.....))))))))(((((((.((.((.....)).)).)))))))..((((....))))..))).......... (-19.84 = -19.84 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:05:00 2011