| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,744,868 – 20,744,959 |
| Length | 91 |
| Max. P | 0.831498 |
| Location | 20,744,868 – 20,744,959 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 69.69 |
| Shannon entropy | 0.55329 |
| G+C content | 0.42438 |
| Mean single sequence MFE | -21.80 |
| Consensus MFE | -7.48 |
| Energy contribution | -7.60 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20744868 91 + 22422827 CAAAGAUAUAAUGGGGGACCUACUUAUACAGCUACAUACAUAUAUUAUGGCCGGCACGACGACAGACAUCUGUCGAUGG-CUUCUCAACAGU ...........(((((..((..........(((.((((.......))))...)))....((((((....))))))..))-..)))))..... ( -20.50, z-score = -1.64, R) >droYak2.chrX 19961576 87 + 21770863 CAAAGAUAUAGAGGGGAACCUACUUAUACAGCCAC----AUAUAUUAUGGCCGGGACGACGACAGACAUCUGUCGAUGG-CUUCUCAACAGU .....(((...(((....)))...)))...((((.----(.....).)))).((((.(.((((((....))))))....-).))))...... ( -21.10, z-score = -1.74, R) >droSec1.super_8 3006885 91 + 3762037 CAAAGAUAUAAAGGGGGAGCUACUUAUACAGCUACAUACAUAUAUUGUGGCCGGUACGACGACAGACAUCUGUCGAUGG-CUUCUCAACAGU .............(((((((((.(..(((.((((((.........))))))..)))..)((((((....)))))).)))-))))))...... ( -29.50, z-score = -4.33, R) >droSim1.chrX_random 391168 91 + 5698898 CAAAGAUAUAUAGGGGGAGCUACUUAUACAGCUACAUACAUAUAUUAUGGCCGGUACGACGACAGACAUCUGUCGAUGG-CUUCUCAACAGU .............(((((((((.(..(((.((((.............))))..)))..)((((((....)))))).)))-))))))...... ( -23.82, z-score = -2.64, R) >droVir3.scaffold_12970 5064946 79 + 11907090 ------------AAUACAUGUAUUUGAAGAGCUGCAGUUGAGU-UGGAAUUCGAUUGAAUGAAAAACUGCUUACUUCAAUCCCCUCAGAAAU ------------...........((((((....((((((..((-(.((......)).)))....))))))...))))))............. ( -14.10, z-score = -0.81, R) >consensus CAAAGAUAUAAAGGGGGACCUACUUAUACAGCUACAUACAUAUAUUAUGGCCGGUACGACGACAGACAUCUGUCGAUGG_CUUCUCAACAGU .............(((((.....((((...((((.............))))........((((((....))))))))))..)))))...... ( -7.48 = -7.60 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:57 2011