| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,727,403 – 20,727,513 |
| Length | 110 |
| Max. P | 0.791382 |
| Location | 20,727,403 – 20,727,510 |
|---|---|
| Length | 107 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.88 |
| Shannon entropy | 0.49601 |
| G+C content | 0.39820 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20727403 107 + 22422827 --GGUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUACGUUUUGCCUUUUU-AAAGUGG-CGCC --((((.........((((((....))))))..(((((((((.((((.(((.((.((......(((....)))......-----)).)).))).))))..)))-.))))))-)))) ( -20.50, z-score = -1.04, R) >droSim1.chrX 15954040 107 + 17042790 --GGUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUUCGUUUUGCCUUUUU-AAAGUGG-CGCC --((((((.....((.((((..(.((((((((.....)))))))).)..)))).))((((((.((.(..((........-----........))..)))...)-)))))))-)))) ( -20.19, z-score = -1.03, R) >droSec1.super_8 2988158 107 + 3762037 --GGUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUUCGUUUUGCCUUUUU-AAAGUGG-CGCC --((((((.....((.((((..(.((((((((.....)))))))).)..)))).))((((((.((.(..((........-----........))..)))...)-)))))))-)))) ( -20.19, z-score = -1.03, R) >droYak2.chrX 19944909 108 + 21770863 --GGUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUUCGUUUUGCCUUUUUUAAAGUGG-CGCC --((((((.....((.((((..(.((((((((.....)))))))).)..)))).))((((((.((.(..((........-----........))..)))....))))))))-)))) ( -19.59, z-score = -0.82, R) >droEre2.scaffold_4690 17311368 106 + 18748788 --GGUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUUCGCUUU-GCCUUUU-AAAGUGG-CGCC --((((((...(((((...(((..((((((((.....)))))))).)))...((((....)))))))))..........-----......(((((-(.....)-)))))))-)))) ( -22.90, z-score = -1.79, R) >dp4.chrXL_group1e 9372887 113 + 12523060 --GGUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUCUUUCUGGUUUUUCUUCGUUUUUGCCUUUU-AAAGUGGGCGCC --((((.........((((((....)))))).((((((((((.((((......((((...........(((....)))..........))))...)))).)))-.))))))))))) ( -25.30, z-score = -1.39, R) >droWil1.scaffold_180702 1958016 113 - 4511350 UUGGCGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUUUAGUGUGAAACAACAUUU-UUUCCCUCCGCUCCGCUAUUCUUCAAUCUCUCU-- .(((((.......((.((((..(.((((((((.....)))))))).)..)))).)).......(((((......))))).-.............)))))...............-- ( -16.50, z-score = -0.89, R) >droVir3.scaffold_12970 5047747 88 + 11907090 --AGCGCUUUCCGCACAAAUUCCUCCAUUUGACCCACUUAAAUGUCGUAAUUUAUGAGUAUACAGUGUGAAAUUGUUUAAAAGUGGCGCC-------------------------- --.((((........(((((......)))))...(((((.....(((((...))))).((.(((((.....))))).)).))))))))).-------------------------- ( -16.10, z-score = -0.83, R) >droMoj3.scaffold_6473 4563322 88 + 16943266 --AGCGCUUUCCGCACAAAUUCCUCCAUUUGACCUACUUAAAUGUCGUAAUUUAUGAGUAUACAGUGUGAAAUUGUUUGAAAGUGGCGCC-------------------------- --..((((((((((((.........(((((((.....)))))))(((((...))))).......))))).........))))))).....-------------------------- ( -16.00, z-score = -0.43, R) >droGri2.scaffold_15081 3983707 88 - 4274704 --AGCGCCUUCCGCACAAAUUCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUACAGUGUGAAAUUGUUUAAAAGUGGCGCC-------------------------- --.(((((........(((((.(.((((((((.....)))))))).).)))))(..(((((((...)))))))..)........))))).-------------------------- ( -22.50, z-score = -2.63, R) >consensus __GGUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU_____UCCUUCGUUUUGCCUUUUU_AAAGUGG_CGCC ...........(((((........((((((((.....))))))))((((...))))........)))))............................................... (-10.72 = -10.92 + 0.20)
| Location | 20,727,404 – 20,727,513 |
|---|---|
| Length | 109 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 75.36 |
| Shannon entropy | 0.48640 |
| G+C content | 0.41171 |
| Mean single sequence MFE | -18.55 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20727404 109 + 22422827 GUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUACGUUUUGCCUUUUU-AAAGUGG-CGCCCCC .........((.((((((....))))))..(((((((((.((((.(((.((.((......(((....)))......-----)).)).))).))))..)))-.))))))-.)).... ( -19.00, z-score = -1.26, R) >droSim1.chrX 15954041 109 + 17042790 GUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUUCGUUUUGCCUUUUU-AAAGUGG-CGCCCCC (((((.....((.((((..(.((((((((.....)))))))).)..)))).))((((((.((.(..((........-----........))..)))...)-)))))))-))).... ( -17.69, z-score = -0.90, R) >droSec1.super_8 2988159 109 + 3762037 GUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUUCGUUUUGCCUUUUU-AAAGUGG-CGCCCCC (((((.....((.((((..(.((((((((.....)))))))).)..)))).))((((((.((.(..((........-----........))..)))...)-)))))))-))).... ( -17.69, z-score = -0.90, R) >droYak2.chrX 19944910 110 + 21770863 GUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUUCGUUUUGCCUUUUUUAAAGUGG-CGCCCCC .........((.((((((....))))))..(((((((((.((((.(((..(.((......(((....)))......-----)).)..))).))))...))).))))))-.)).... ( -17.50, z-score = -0.89, R) >droEre2.scaffold_4690 17311369 108 + 18748788 GUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU-----UCCUUCGCUUU-GCCUUUU-AAAGUGG-CGCCCCC (((((...(((((...(((..((((((((.....)))))))).)))...((((....)))))))))..........-----......(((((-(.....)-)))))))-))).... ( -20.40, z-score = -1.79, R) >dp4.chrXL_group1e 9372888 115 + 12523060 GUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUCUUUCUGGUUUUUCUUCGUUUUUGCCUUUU-AAAGUGGGCGCCCCC .........((.((((((....)))))).((((((((((.((((......((((...........(((....)))..........))))...)))).)))-.))))))).)).... ( -23.80, z-score = -1.50, R) >droWil1.scaffold_180702 1958019 113 - 4511350 GCGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUUUAGUGUGAAACAACAUUU-UUUCCCUCCGCUCCGCUAUUCUUCAAUCUCUCUCUC-- (((.....)))..((((..(.((((((((.....)))))))).)..)))).(((.....(((((.((..........-...........)))))))....)))...........-- ( -15.20, z-score = -1.52, R) >droVir3.scaffold_12970 5047748 89 + 11907090 GCGCUUUCCGCACAAAUUCCUCCAUUUGACCCACUUAAAUGUCGUAAUUUAUGAGUAUACAGUGUGAAAUUGUUUAA---AAGUGGCGCCCC------------------------ ((((........(((((......)))))...(((((.....(((((...))))).((.(((((.....))))).)).---)))))))))...------------------------ ( -15.90, z-score = -1.04, R) >droMoj3.scaffold_6473 4563323 89 + 16943266 GCGCUUUCCGCACAAAUUCCUCCAUUUGACCUACUUAAAUGUCGUAAUUUAUGAGUAUACAGUGUGAAAUUGUUUGA---AAGUGGCGCCCC------------------------ .((((((((((((.........(((((((.....)))))))(((((...))))).......))))).........))---))))).......------------------------ ( -16.00, z-score = -0.79, R) >droGri2.scaffold_15081 3983708 90 - 4274704 GCGCCUUCCGCACAAAUUCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUACAGUGUGAAAUUGUUUAA---AAGUGGCGCCCCC----------------------- (((((........(((((.(.((((((((.....)))))))).).)))))(..(((((((...)))))))..)....---....)))))....----------------------- ( -22.30, z-score = -2.96, R) >consensus GUGUCUUCCGCACAAAUGCCUCCAUUUGACCCACUUAAAUGGCGUAAUUUAUGAUUUUAUAGUGUGAAUUUUUUCU_____UCCUUCGCUUUGCCUUUUU_AAAGUGG_CGCCCCC ........(((((........((((((((.....))))))))((((...))))........))))).................................................. (-10.72 = -10.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:51 2011