| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,726,851 – 20,726,901 |
| Length | 50 |
| Max. P | 0.961406 |
| Location | 20,726,851 – 20,726,901 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 98.80 |
| Shannon entropy | 0.01942 |
| G+C content | 0.41200 |
| Mean single sequence MFE | -11.48 |
| Consensus MFE | -11.76 |
| Energy contribution | -12.16 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20726851 50 + 22422827 UAACUGAUUACUGCUAACGGCGAAGUUUUUGCUGUUCGCUGUGGAAAACU .......((((.((.((((((((.....)))))))).)).))))...... ( -13.60, z-score = -2.76, R) >droSim1.chrX 15953488 50 + 17042790 UAACUGAUUACUGCUAACGGCGAAGUUUUUGCUGUUCGCUGUGGAAAACU .......((((.((.((((((((.....)))))))).)).))))...... ( -13.60, z-score = -2.76, R) >droSec1.super_8 2987607 50 + 3762037 UAACUGAUUACUGCUAACGGCGAAGUUUUUGCUGUUCGCUGUGGAAAACU .......((((.((.((((((((.....)))))))).)).))))...... ( -13.60, z-score = -2.76, R) >droYak2.chrX 19944295 50 + 21770863 UAACUGAUUACUGCUAAAGGCGAAGUUUUUGCUGUUCGCUGUGGAAAACU .......((((.((.((.(((((.....))))).)).)).))))...... ( -8.30, z-score = -0.17, R) >droEre2.scaffold_4690 17310780 50 + 18748788 UAACUGAUUACUGCUAAAGGCGAAGUUUUUGCUGUUCGCUGUGGAAAACU .......((((.((.((.(((((.....))))).)).)).))))...... ( -8.30, z-score = -0.17, R) >consensus UAACUGAUUACUGCUAACGGCGAAGUUUUUGCUGUUCGCUGUGGAAAACU .......((((.((.((((((((.....)))))))).)).))))...... (-11.76 = -12.16 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:50 2011