| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,698,531 – 20,698,592 |
| Length | 61 |
| Max. P | 0.956746 |
| Location | 20,698,531 – 20,698,592 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 81.20 |
| Shannon entropy | 0.36591 |
| G+C content | 0.44978 |
| Mean single sequence MFE | -16.38 |
| Consensus MFE | -13.47 |
| Energy contribution | -13.62 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20698531 61 - 22422827 CUCAUUAGCGCGUCGAGCUGAUUACUGAAUAGCCCUUAGUGAUUAGCGACUAGUGUCAAGU ....((..(((.....((((((((((((.......)))))))))))).....)))..)).. ( -18.50, z-score = -2.17, R) >droSim1.chrX_random 368569 61 - 5698898 CUCAUUAGCGCGUCGAGCUGAUUACUGAAUAGCCCUUAGUGAUUAGCGACUAGUGUCAAGU ....((..(((.....((((((((((((.......)))))))))))).....)))..)).. ( -18.50, z-score = -2.17, R) >droSec1.super_8 2961858 61 - 3762037 CUCAUUAGCGCGUCGAGCUGAUUACUGAAUAGCCCUUAGUGAUUAGCGACUAGUGUCAAGU ....((..(((.....((((((((((((.......)))))))))))).....)))..)).. ( -18.50, z-score = -2.17, R) >droYak2.chrX 19923198 61 - 21770863 CUCAUUAGCGCGUCGAGCUGAUUACUAAAUAGCCCUUAGUGAUUAGCGACUAGUGUCAAGU ....((..(((.....((((((((((((.......)))))))))))).....)))..)).. ( -18.40, z-score = -2.47, R) >droEre2.scaffold_4690 17290136 61 - 18748788 CUCAUUAGCGCGUCGAGCUGAUUACUGAAUAGCCCAUAGUGAUUAGCGACUAGUGUCAAGU ....((..(((.....(((((((((((.........))))))))))).....)))..)).. ( -16.00, z-score = -1.32, R) >droGri2.scaffold_15081 3962284 50 + 4274704 CUGCUUAGUGUUUAGAGUUAAUUGACAAUUGG----UGGUGGAUUGAGCCACGU------- ..(((...((((...........))))...))----).((((......))))..------- ( -8.40, z-score = 0.01, R) >consensus CUCAUUAGCGCGUCGAGCUGAUUACUGAAUAGCCCUUAGUGAUUAGCGACUAGUGUCAAGU .......((((.....((((((((((((.......)))))))))))).....))))..... (-13.47 = -13.62 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:49 2011