| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,687,872 – 20,687,992 |
| Length | 120 |
| Max. P | 0.691425 |
| Location | 20,687,872 – 20,687,992 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.83 |
| Shannon entropy | 0.19652 |
| G+C content | 0.37319 |
| Mean single sequence MFE | -29.96 |
| Consensus MFE | -23.86 |
| Energy contribution | -24.14 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.691425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20687872 120 + 22422827 AAGGCGAUUUUCACUUUAAAUUGUCUAACGUUUUGGCAGCUAAAUAUUGCCUUCCAUAACAUUUAAGCUCUGAACUGCAGCUGCAAUGUGAAACAGAGAGUGACAAUUUAUGUCAUGGAC .(((((((((.......)))))))))........(((((.......))))).(((((.(((((((..(((((.(((((....)))..))....)))))..)))......)))).))))). ( -28.50, z-score = -1.14, R) >droEre2.scaffold_4690 17278654 115 + 18748788 UAGGCGAUUUUCACUUUAAAUUGCCUGACGUUUUGGCAACUAAAUAUUGCCU-----AGCAUUCUAACUCUUAACGGCAGCUGCAAUGCGAAAUAGAGAGUGACAAUUUAUGUCAUGAAC ((((((((((.......))))))))))..(((..(((((.......))))).-----))).(((...((((.....(((.......))).....)))).((((((.....))))))))). ( -29.60, z-score = -2.30, R) >droYak2.chrX 19911608 120 + 21770863 UAGGCGAUUUUCACUUUAAAUUGCCUGACGUUUUGGCAGCUAAAUAUUGCCUGUCAUAGCAUUCUAACUCUUAAUGGCAGCUGCAAUGUGAAAUAGAGAGUUACAAUUUAUGUCAUGGAC .(((((((((.......)))))))))((((((.(((((((........).)))))).)))(((.((((((((.((..((.(......)))..)).)))))))).)))....)))...... ( -32.30, z-score = -1.94, R) >droSec1.super_8 2951113 120 + 3762037 UAGGCGAAUUUCACUUUAAAUUGCCUAACGUUUCGGCAGCUAAAUAUUGCAUUCCAUAGCAAUUAAGCUCUAAACUGCAGCUGUAAUGUGAAACAGAGAGUGACAAUUUAUGUUAUGGAC (((((((.((.......)).)))))))..((((((((((((....(((((........)))))...((........))))))))....)))))).....((((((.....)))))).... ( -28.60, z-score = -1.34, R) >droSim1.chrX_random 357456 120 + 5698898 UAGGCGAUUUUCACUUUAAAUUGCCUAACGUUUUGGCAGCUAAAUAUUGCAUUCCAUAGCAUUUAAGCUCUAAACUGCAGCUGUAAUGUGAAACAGACAGUGACAAUUUAUGUCAUGGAC ((((((((((.......))))))))))..(((((.((((((......(((........))).....((........)))))))).....))))).....((((((.....)))))).... ( -30.80, z-score = -1.96, R) >consensus UAGGCGAUUUUCACUUUAAAUUGCCUAACGUUUUGGCAGCUAAAUAUUGCCUUCCAUAGCAUUUAAGCUCUAAACUGCAGCUGCAAUGUGAAACAGAGAGUGACAAUUUAUGUCAUGGAC ((((((((((.......))))))))))..((((((((((.......))))).......(((((..(((((......).))))..)))))))))).....((((((.....)))))).... (-23.86 = -24.14 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:48 2011