| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,687,288 – 20,687,376 |
| Length | 88 |
| Max. P | 0.749045 |
| Location | 20,687,288 – 20,687,376 |
|---|---|
| Length | 88 |
| Sequences | 5 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 93.41 |
| Shannon entropy | 0.11514 |
| G+C content | 0.41818 |
| Mean single sequence MFE | -22.72 |
| Consensus MFE | -21.08 |
| Energy contribution | -21.48 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20687288 88 - 22422827 UCUUAGGCAGAUCUCCGGCAUAUCAAUUGCCAGUUCAAUUUGCAAAUUUCUCCAUCACAGACAAUGAGCAAAUGGAACACUGAGAGAA ((((((..........((((.......)))).((((.((((((..((((((.......))).)))..)))))).)))).))))))... ( -23.90, z-score = -2.62, R) >droSim1.chrX_random 356870 88 - 5698898 UGUUAGGCAGAUCUCCGGCAUAUCAAUUGCCAGUUCAAUUUGCAAAUUUCUGCAUCACAGACAAUGAGCAAGUGGAACACUGAGAGAA ...........(((((((((.......)))).((((.((((((..(((((((.....)))).)))..)))))).))))...).)))). ( -25.00, z-score = -2.06, R) >droSec1.super_8 2950526 88 - 3762037 UGUUAGGCAGAUCUCCGGCAUAUCAAUUGCCAGUUCAAUUUGCAAAUUUCUGCAUCACAGACAAUGAGCAAGUGGAACACUGAGAGAA ...........(((((((((.......)))).((((.((((((..(((((((.....)))).)))..)))))).))))...).)))). ( -25.00, z-score = -2.06, R) >droYak2.chrX 19910984 88 - 21770863 UGUUAGGCAGAUCUCUGGCAUAUCAAUUGCCCGUUCAAUUUCCAAAUUUCUGCCUCACAGACAAUGAGCAAAUGGAACACUGUGAGAA .....((((((...(.((((.......)))).)...............))))))((((((...................))))))... ( -18.08, z-score = 0.07, R) >droEre2.scaffold_4690 17278056 88 - 18748788 UGUUUGGCAGUUCUCUGGCAUAUCAAUGGCCCGUUAAAUUUGCAAAUUUCUGCAUCACAGACAAUGAGCAAAUGGAGCACUGAGAGAA ..(((..((((.(((((((.........)))......((((((..(((((((.....)))).)))..)))))))))).))))..))). ( -21.60, z-score = -0.26, R) >consensus UGUUAGGCAGAUCUCCGGCAUAUCAAUUGCCAGUUCAAUUUGCAAAUUUCUGCAUCACAGACAAUGAGCAAAUGGAACACUGAGAGAA ...........((((.((((.......)))).((((.((((((..(((((((.....)))).)))..)))))).)))).....)))). (-21.08 = -21.48 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:47 2011