| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,684,732 – 20,684,833 |
| Length | 101 |
| Max. P | 0.515895 |
| Location | 20,684,732 – 20,684,833 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 86.79 |
| Shannon entropy | 0.18193 |
| G+C content | 0.37667 |
| Mean single sequence MFE | -28.74 |
| Consensus MFE | -16.63 |
| Energy contribution | -19.86 |
| Covariance contribution | 3.23 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20684732 101 - 22422827 UAUGGCAGUA-----UUUUAUAGCAGAAAAGGUAAGAUGAGUGGUGUGGUCACAUGCUAGUAUAAACAUACAAAGUACUAGUCCAUCACGAAGAAUCACUUCUUUA .(((((((((-----((((......................(((((((....)))))))((((....)))))))))))).).))))...((((((....)))))). ( -19.60, z-score = -0.23, R) >droSim1.chrX 15916127 106 - 17042790 UAUGGGAGUGAUGGUUUUUAUGGCGGAAGUGAUCAGAUGAGUGGUCAGGUCACAUGCUAGUUUAAACAUACAAAUUACUAGUCCGUCACGAAACAUCACUUAUUUA .....((((((((...((..(((((((.((((((.(((.....))).))))))...(((((...............))))))))))))..)).))))))))..... ( -34.16, z-score = -3.93, R) >droSec1.super_8 2947930 106 - 3762037 UAUGGGAGUGAUGGUUUUUAUGGCGGAAGUGAUCAGAUGAGUGGUCAGGUCACAUGCUAGUUUAAACAUACAAAUUACUAGUCCGUCACGAAGAAUCACUUAUUUA .....(((((((..((((..(((((((.((((((.(((.....))).))))))...(((((...............))))))))))))..)))))))))))..... ( -32.46, z-score = -3.39, R) >consensus UAUGGGAGUGAUGGUUUUUAUGGCGGAAGUGAUCAGAUGAGUGGUCAGGUCACAUGCUAGUUUAAACAUACAAAUUACUAGUCCGUCACGAAGAAUCACUUAUUUA .....(((((((...(((..(((((((.((((((.(((.....))).))))))...(((((...............))))))))))))..))).)))))))..... (-16.63 = -19.86 + 3.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:45 2011