| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,658,835 – 20,658,927 |
| Length | 92 |
| Max. P | 0.506929 |
| Location | 20,658,835 – 20,658,927 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 72.89 |
| Shannon entropy | 0.47906 |
| G+C content | 0.55878 |
| Mean single sequence MFE | -24.47 |
| Consensus MFE | -13.32 |
| Energy contribution | -13.40 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20658835 92 - 22422827 ---AUAAGCUUCGACCAUGUCGGACACGUGACCCGCGCUUAUGCCGCGCGAUGAAACCGAUAACACGAGC-----UGACUAAGCCGAUUAGGCCGAUAGC ---....((((((.((.((((((...(((....(((((.......))))))))...))))))...((.((-----(.....)))))....)).))).))) ( -27.50, z-score = -2.00, R) >droSim1.chrX_random 338593 92 - 5698898 ---AUAAGCUUCGACCAUGUCGGACACGUGACCCGCGCUUAUCCCGCGCGAUGAAACCGAUAAUACGCGC-----CGUCUAAGCCGAUUAAACCGAUAAC ---..............((((((.....(((..((.(((((..(.(((((((..........)).)))))-----.)..))))))).)))..)))))).. ( -22.40, z-score = -1.10, R) >droSec1.super_8 2922551 92 - 3762037 ---AUAAGGUUCGACCAUGUCGGACACGUGACCCGCGCUUAUCCCGCGCGAUGAAACCGAUAACACGCGC-----CGUCUAAGCCGAUUAAACCGAUAAC ---.....(((((((...)))))))........((.(((((..(.(((((.((..........)))))))-----.)..))))))).............. ( -24.70, z-score = -1.22, R) >droYak2.chrX 19882143 92 - 21770863 ---AAAAGCGUCGACCAUGUCGGACACGUGACCCGCGCUUGUCCCGCGCGAUGAAACCGAUAACACGCGC-----CGACUUAGCCGAUUAAGCCGAUAAC ---....((((((.(...(((((.(.((((...(((((.......))))).((....))....)))).))-----))))...).))))...))....... ( -25.60, z-score = -1.14, R) >droEre2.scaffold_4690 17249910 97 - 18748788 ---AAAGGCUUCGACCAUGUCGGACACGUGACCCGCGCUUGUCCCGCGCGAUGAAACCGAUAAUACGCGCCUAAUCGAGUAAGCCGAUUAAACCGAUAAC ---...((((((((.......(((((.(((.....))).))))).(((((((..........)).)))))....))))...))))............... ( -26.30, z-score = -1.33, R) >dp4.chrXL_group1e 9307629 77 - 12523060 GAGGGAGUGCUCGACCAUGUCGGACACGUGACACGCGCCUGUCCCGCGCGAU--AGCCCACAACAAUC-------AAAUCAGAACA-------------- ..(((.(((..((((...))))..)))......(((((.......)))))..--..))).........-------...........-------------- ( -22.40, z-score = -0.84, R) >droPer1.super_22 788100 77 + 1688296 GAGGGAGUGCUCGACCAUGUCGGACACGUGACACGCGCCUGUCCCGCGCGAU--AGCCCACAACAAUC-------AAAUCAGAACA-------------- ..(((.(((..((((...))))..)))......(((((.......)))))..--..))).........-------...........-------------- ( -22.40, z-score = -0.84, R) >consensus ___AUAAGCUUCGACCAUGUCGGACACGUGACCCGCGCUUGUCCCGCGCGAUGAAACCGAUAACACGCGC_____CGACUAAGCCGAUUAAACCGAUAAC .................((((((.(....)...(((((.......)))))......))))))...................................... (-13.32 = -13.40 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:45 2011