| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,646,726 – 20,646,840 |
| Length | 114 |
| Max. P | 0.665225 |
| Location | 20,646,726 – 20,646,840 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 89.33 |
| Shannon entropy | 0.17030 |
| G+C content | 0.44006 |
| Mean single sequence MFE | -33.17 |
| Consensus MFE | -24.99 |
| Energy contribution | -25.05 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20646726 114 + 22422827 UGAUUUCCGGAUAAUUCUUUGUUAAUUAGUGCGACUACUCGAGUUACCCGGAAAUGUUUGUUUUGGAAAUCCUCUACAAAGGUGAGUUCGAGUGCACUGUACUGCCUGAAUUCC ..((((((((.((((((...((........))((....)))))))).)))))))).(((((...((....))...)))))...((((((.((.(((......))))))))))). ( -29.50, z-score = -1.95, R) >droEre2.scaffold_4690 17239827 108 + 18748788 CCAUUUCCGGAUAAUUCUUUGUUAAUUAGUCGGACU------AUUGCCCGGAAAUGUUUGUUUUGGGAAUCGUCUACAAAGGUGGGUUCGGGUGCAUUGUACUGCCUGAACUCC .(((((((((.((((..((((.........))))..------)))).)))))))))....((((((((....))).)))))..(((((((((((........))))))))))). ( -31.30, z-score = -1.51, R) >droSec1.super_8 2885894 114 + 3762037 CGAUUUCCGGGUAAUUCUUUGUUAAUUAGUGGGACUACUCGAAUUGCCCAGAAACGUUUGUUUUGGGAAUCGUGUACAAAGGUGAGUUCGGGUGCACUGUGCUGCCUGAAUUCC (((((((((((((((((...(((.........))).....))))))))).(((((....)))))))))))))...........((((((((((((.....)).)))))))))). ( -39.40, z-score = -3.29, R) >droSim1.chrX 15876167 114 + 17042790 CGAUUUCCGGAUAAUUCUUUGUUAAUUAGUGGGACUACUCGAAUUGCCCAGAAACGUUUGUUUUGGGAAUCGUGUACAAAGGUGAGUUCGGGUGCACUGUGCUGCCUGAAUUCC ((((((((((.((((((...(((.........))).....)))))).)).(((((....)))))))))))))...........((((((((((((.....)).)))))))))). ( -32.50, z-score = -1.43, R) >consensus CGAUUUCCGGAUAAUUCUUUGUUAAUUAGUGGGACUACUCGAAUUGCCCAGAAACGUUUGUUUUGGGAAUCGUCUACAAAGGUGAGUUCGGGUGCACUGUACUGCCUGAAUUCC ((((((((((.((((((...(((.........))).....)))))).)).(((((....)))))))))))))...........(((((((((((........))))))))))). (-24.99 = -25.05 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:44 2011