| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,646,305 – 20,646,480 |
| Length | 175 |
| Max. P | 0.718729 |
| Location | 20,646,305 – 20,646,480 |
|---|---|
| Length | 175 |
| Sequences | 5 |
| Columns | 190 |
| Reading direction | forward |
| Mean pairwise identity | 73.41 |
| Shannon entropy | 0.46529 |
| G+C content | 0.40289 |
| Mean single sequence MFE | -44.91 |
| Consensus MFE | -21.23 |
| Energy contribution | -24.35 |
| Covariance contribution | 3.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20646305 175 + 22422827 CUCUCGA-CCAUAGCAUUCUUCCAUUAUUAUAUCAAUUUGAUCUGUUUGGUUCAAACACAC-GAUGAGCCAAGGUCAAAGAAAUAUACUUGCAGCAAUAAAUGAUGCGAACUGAGUUCGAUUGGCCCCUUAUGGCACAUGACGAUCUCAGGACC------CAUCGGUUGGGUAUUAUUAUUAU------- ..(((((-((...(((............(((((...((((((((...(((((((.......-..)))))))))))))))...)))))..)))..........((((.(..(((((.(((..(((((......))).))...))).)))))..).------)))))))))))............------- ( -48.44, z-score = -2.44, R) >droVir3.scaffold_9476 57207 180 + 69990 CUUUCGAGCUAUUUCAUUAUCUAUUUCCUAUGUAAAAUCUCUAGCUUUUGUUUUGUUAC-CGAGUUUGACUCCUUCAAAGACAUA------CAGACAU-GAUAAUAUCGACUCAGUUUUAUAGCCUUGUGGAGUCAGAUAUGCCUCUUACUACCUUUUACCAACUGUUGAAUACAACUAAUAUGCCCC-- .......((((((..................((((((((..((((.........)))).-.))((((((((((..(((.(..(((------.((((.(-((..........))))))))))..).))).))))))))))...............)))))).....((((....)))).)))).))...-- ( -25.40, z-score = 0.70, R) >droEre2.scaffold_4690 17239406 183 + 18748788 CACUCGA-CCAUAGCGUUCUCCCACUAUCAUAUCAAUUUGAUCUGUUUGGUUCAAACACACAGCUGAGCCAAGGUCAAAGAAAUAUACUUGCAGCAAUAGAUGAUGCGAACUGAGUUCGAUGUGCCCCUUGUGGCACAGGACGAUCUCAGGACA------CAUCGGUUGGAUGUUAUUAUUAAAAUUAUU .......-..(((((((((..((......((((...((((((((...(((((((..........)))))))))))))))...))))................((((.(..(((((.(((.((((((......))))))...))).)))))..).------))))))..)))))))))............. ( -54.30, z-score = -2.69, R) >droSec1.super_8 2885482 173 + 3762037 CUCUCGA-CCAUAGCAUUCUUCCAGUAUUAUAUCAAUUUGAUCUGUUUGGUUCAAACACACUGAUGAGCCAAGGUCAAAGAAAUAUACUUGCAGCAAUAAAUGAUGCGAACUGAGUUCGAUUGGCCCCUUAUGGCACACGACGACCUCAGGACC------CAUCGGUUGGGUAUUAUUAU---------- ..(((((-((..............(((.(((((...((((((((...(((((((..........)))))))))))))))...)))))..)))..........((((.(..(((((.(((..(((((......))).))...))).)))))..).------))))))))))).........---------- ( -49.30, z-score = -2.39, R) >droSim1.chrX 15875754 173 + 17042790 CUCUCGA-CCAUAGCAUUCUUCCAGUAUUAUAUCAAUUUGAUCUGUUUGGUUCAAACACACUGAUGAGCCAAGGUCAAAGAAAUAUACUUGCAGCAAUAAAUGAUGCGAACUGAGUUCGAUUGGCCCCUUUUGGCACACGACGACCUCAGGACC------CAUCGGUUGGAUAUUAUUAU---------- .((.(((-((..............(((.(((((...((((((((...(((((((..........)))))))))))))))...)))))..)))..........((((.(..(((((.(((..(((((......))).))...))).)))))..).------))))))))))).........---------- ( -47.10, z-score = -2.23, R) >consensus CUCUCGA_CCAUAGCAUUCUUCCAGUAUUAUAUCAAUUUGAUCUGUUUGGUUCAAACACACUGAUGAGCCAAGGUCAAAGAAAUAUACUUGCAGCAAUAAAUGAUGCGAACUGAGUUCGAUUGGCCCCUUAUGGCACACGACGAUCUCAGGACC______CAUCGGUUGGAUAUUAUUAUUA________ ..(((((.((...(((((.((.......(((((...((((((((...(((((((..........)))))))))))))))...)))))............)).)))))...(((((.(((....(((......)))......))).)))))..............)))))))................... (-21.23 = -24.35 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:41 2011