| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,641,626 – 20,641,683 |
| Length | 57 |
| Max. P | 0.500000 |
| Location | 20,641,626 – 20,641,683 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 95.09 |
| Shannon entropy | 0.08473 |
| G+C content | 0.35439 |
| Mean single sequence MFE | -10.70 |
| Consensus MFE | -9.94 |
| Energy contribution | -9.74 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 20641626 57 + 22422827 CCUCUUGUUUAGGACUUAAUUCGCUAGCGGUAUUAUAAAGUUAUUAUCGUUGCGUUU (((.......)))........(((.(((((((.((......)).))))))))))... ( -10.90, z-score = -1.26, R) >droEre2.scaffold_4690 17234563 57 + 18748788 CCUCCUGCUUAGGACUUUAUUUGCUAGCGGUAUUAUAAAGUUAUUAUCGUUGCGUUU ..((((....))))........((.(((((((.((......)).))))))))).... ( -11.40, z-score = -1.10, R) >droYak2.chrX 19866674 57 + 21770863 CCUCCUGUUUAGGACUUUAAUCACUAGCGGUAUUAUAAAGUUAUUAUCGUUGCGUUU ..((((....))))........((((((((((.((......)).)))))))).)).. ( -9.40, z-score = -0.90, R) >droSec1.super_8 2880749 57 + 3762037 CCUCUUGUUUAGGACUUAAUUCGCUAGCGGUAUUAUAAAGUUAUUAUCGUUGCGUUU (((.......)))........(((.(((((((.((......)).))))))))))... ( -10.90, z-score = -1.26, R) >droSim1.chrX 15870623 57 + 17042790 CCUCUUGUUUAGGACUUAAUUCGCUAGCGGUAUUAUAAAGUUAUUAUCGUUGCGUUU (((.......)))........(((.(((((((.((......)).))))))))))... ( -10.90, z-score = -1.26, R) >consensus CCUCUUGUUUAGGACUUAAUUCGCUAGCGGUAUUAUAAAGUUAUUAUCGUUGCGUUU ..((((....)))).......(((.(((((((.((......)).))))))))))... ( -9.94 = -9.74 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:38 2011