| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,631,530 – 20,631,649 |
| Length | 119 |
| Max. P | 0.666335 |
| Location | 20,631,530 – 20,631,649 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.77 |
| Shannon entropy | 0.56911 |
| G+C content | 0.44375 |
| Mean single sequence MFE | -33.40 |
| Consensus MFE | -11.42 |
| Energy contribution | -11.98 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20631530 119 - 22422827 GAACUAAGGAUUCUGCCUCGCAUUGGUGAAAGGCGCUUUUACGGUACUUUUUGGAACUAGAAGUUCUUUCUC-AUGAAAGCGCCACCUAUGAGGGCGCAGCUUAUAAUACUAAGGAGCCA .......((...(((((((.(((.(((....((((((((((.((........(((((.....)))))...))-.))))))))))))).))).))).))))((((......))))...)). ( -34.40, z-score = -1.08, R) >droEre2.scaffold_4690 17227296 105 - 18748788 ------------GAACUAAGGAUUGGUCAACGAAA---UGGCGGUAAGCUGUGGUACUAAGGGUACUGGCCCAAAGAAAGCACCACCUAUGGGGGCGCAGUGUAGACUAAUAUAUAGAUA ------------...(((...(((((((.((...(---(.((((....)))).))(((..((((....)))).......((.((.((....)))).))))))).)))))))...)))... ( -30.10, z-score = -1.30, R) >droYak2.chrX 19859259 119 - 21770863 GAACUACGGAUUGGGCUUAACAGUGGUGAAAGGAGCUUUUACGGUAAGCUUUGGUACUAUGGAUACUGGCCU-AAGAAAGCACCACCUAUGAGGGCACAGUGUAGAAUAAUAUGUAGAUA ...(((((..(((((((.....((((((...(((((((.......)))))))..)))))).......)))))-))....((((..(((....)))....)))).........)))))... ( -30.70, z-score = -1.01, R) >droSec1.super_8 2868479 119 - 3762037 GAAAUAUCGAAUCUUCCUCGCAUUGGUGAAUGGCGCUCUUACGGUACUCUUUGGAACUGAGAGUGCUUUUUC-AUGAAAGCGCCACCUAUGAGGGCGUAGUAUAUAAUACUAUGUAGACA ...............(((((....(((....((((((.(((.(((((((((.......))))))))).....-.))).)))))))))..)))))(((((((((...)))))))))..... ( -36.40, z-score = -2.56, R) >droSim1.chrX 15856954 102 - 17042790 -----------------GAACUAUGGUGAAUGGCGCUCUUACGGUACUCUUUGGAACUAAGAGUGCUUCAUC-GUGAAAGCGCCACCUAUGAGGGCGUAGUAAAUAAUACUAUGUAGACA -----------------....(((((.(..(((((((.(((((((((((((.......)))))))).....)-)))).))))))))))))).(.((((((((.....))))))))...). ( -35.40, z-score = -3.70, R) >consensus GAA_UA__GA_UCUGCCUAGCAUUGGUGAAAGGCGCUCUUACGGUACUCUUUGGAACUAAGAGUACUUGCUC_AUGAAAGCGCCACCUAUGAGGGCGCAGUAUAUAAUACUAUGUAGACA .........................((((.........))))(((((((((.......)))))))))............(((((.(......))))))...................... (-11.42 = -11.98 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:37 2011