| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,629,731 – 20,629,824 |
| Length | 93 |
| Max. P | 0.976252 |
| Location | 20,629,731 – 20,629,824 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 76.50 |
| Shannon entropy | 0.43576 |
| G+C content | 0.54582 |
| Mean single sequence MFE | -36.72 |
| Consensus MFE | -24.14 |
| Energy contribution | -24.65 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20629731 93 - 22422827 -AGUAAAUGUGCACUACAGUGGGACUUCGAUGAGGGGGAGCUUCUCCCUUGGCAGGCCA-UCCUGAGAGGCUCCACUGUGUCUGCGUUUUUCCAC----- -.(.(((..((((.((((((((..((((...(((((((.....)))))))..((((...-.)))).))))..))))))))..))))..))).)..----- ( -38.10, z-score = -2.29, R) >droSim1.chr3R 1156491 93 - 27517382 -AGUAAAUGUGCACUACAGUGGGACUUCGAUGAGGGGGCGCUUCUCCCUUGGCAGGUCA-UCCUGAGAGGCUCCACUGUGUCUGUGUUUUUCCAC----- -.(.(((.(..((.((((((((..((((...(((((((.....)))))))..((((...-.)))).))))..))))))))..))..).))).)..----- ( -35.60, z-score = -1.85, R) >droSec1.super_8 2866660 93 - 3762037 -AGUAAAUGUGCACUACAGUGGGACUUCGAUGAGGGGGCGCUUCUCCCUUGGCAGGUCA-UCCUGAGAGGCUCCACUGUGUCUGUGUUUUUCCAC----- -.(.(((.(..((.((((((((..((((...(((((((.....)))))))..((((...-.)))).))))..))))))))..))..).))).)..----- ( -35.60, z-score = -1.85, R) >droYak2.chrX 19857544 93 - 21770863 -AGUAAAUGUGCACUGCAGUGGGACUCCGAUGCGGGGACGCUUCUCCCUUGGCGUUCCA-UCCUCAGAGGCUCCACUGUGUCAGUGUUUUUGCAC----- -.(((((...(((((((((((((.(((.((....((((((((........)))))))).-...)).)))..)))))))...)))))).)))))..----- ( -40.20, z-score = -3.36, R) >droEre2.scaffold_4690 17225661 93 - 18748788 -AGUAAAUGUGCACUACAGUGGGACUCCGGCGAGGGGGCGCUUCUUCCUUGGCGGGCCA-UCCUGCGAGGCUCCACUGUGCCAGUGUUUUUGCAC----- -.(((((...(((((((((((((...(((.((((((((.....)))))))).)))(((.-((....)))))))))))))...))))).)))))..----- ( -40.70, z-score = -1.94, R) >droAna3.scaffold_12903 744279 100 + 802071 AAAAAAAAAUGAGGGACAGUGUAGCCUGGCUGGGCGGGGAUAAUUGGUAUUGUGGAGAACUCCUAUCAGACUCCACUGUACCUGUUUUUCGGCGCUCCAG .............(((..((((.((((....))))..(((.(((.(((((.((((((..((......)).)))))).))))).))).))).))))))).. ( -30.10, z-score = -0.81, R) >consensus _AGUAAAUGUGCACUACAGUGGGACUUCGAUGAGGGGGCGCUUCUCCCUUGGCAGGCCA_UCCUGAGAGGCUCCACUGUGUCUGUGUUUUUCCAC_____ ..........((((((((((((..((((..((((((((.....)))))))).((((.....)))).))))..))))))))...))))............. (-24.14 = -24.65 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:36 2011