Locus 15721

Sequence ID dm3.chrX
Location 20,625,166 – 20,625,284
Length 118
Max. P 0.710445
window21660

overview

Window 0

Location 20,625,166 – 20,625,284
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 78.44
Shannon entropy 0.28368
G+C content 0.43304
Mean single sequence MFE -22.00
Consensus MFE -17.52
Energy contribution -17.30
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.43
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.48
SVM RNA-class probability 0.710445
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20625166 118 - 22422827
ACUAGAACGCAACCUCGUUGUCCAGCUUGUACCAAAAAUGUCCAAGUUGAUGAGAUUACGCAACUGAUAAGGAUAAAAAUGCCUACGAAGAGGCAAUCCCUGACCAUCUCACUAACAA
..(((...(((((...))))).(((((((.((.......)).))))))).((((((....((.((....))........(((((......))))).....))...))))))))).... ( -22.40, z-score =  -0.94, R)
>droSec1.super_8 2862158 94 - 3762037
-------------CUCGUUGUCCAGCUUGUACCAAAAAUGUCCGAGUUGAUGAGAUUACGCAACUGAUAAG-GCCUAAAUGCCUACGAAGAGGCAAUCUC--ACUACCAA--------
-------------.........(((((((.((.......)).))))))).(((((((..((..((....((-((......))))....))..))))))))--).......-------- ( -22.50, z-score =  -1.76, R)
>droSim1.chrX 15850590 98 - 17042790
----------AACCUCGUUGUCCAGCUUGUACCAGAAAUGUCCGAGUUGAUGAGAUUACGCAACUGAUAAGAAUACAAAUGCCUACGAAGAGGCAAUCUC--ACUACCAA--------
----------............(((((((...((....))..))))))).(((((((......((....)).........((((......))))))))))--).......-------- ( -21.10, z-score =  -1.58, R)
>consensus
__________AACCUCGUUGUCCAGCUUGUACCAAAAAUGUCCGAGUUGAUGAGAUUACGCAACUGAUAAG_AUAAAAAUGCCUACGAAGAGGCAAUCUC__ACUACCAA________
.............(((((....(((((((.((.......)).)))))))))))).........................(((((......)))))....................... (-17.52 = -17.30 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:35 2011