Locus 15720

Sequence ID dm3.chrX
Location 20,615,125 – 20,615,222
Length 97
Max. P 0.945515
window21659

overview

Window 9

Location 20,615,125 – 20,615,222
Length 97
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.99
Shannon entropy 0.31650
G+C content 0.38608
Mean single sequence MFE -26.18
Consensus MFE -21.75
Energy contribution -21.62
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.80
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.51
SVM RNA-class probability 0.945515
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 20615125 97 + 22422827
AUAUGAAGAAAACGGCAUUGGAUUGCCUUGCUCGGGAAUGCUGCAACUGCAUUCCUGCGUUAACAAUUACUUCAGUGCAUAUCUGAAAGUCUAACAU-----------------------
...(((((.....((((......))))..((.(((((((((.......))))))))).)).........))))).......................----------------------- ( -26.20, z-score =  -2.01, R)
>droSim1.chrX 15840663 120 + 17042790
AUAAGAAGAAAACGGCAUUGGAUUGCCAUGCUCGGGAAUGCUGCAACUGCAUUCUUGCGUUAACAAUUACUUCAGUACAUAUCUGAAAGUCUAACAUUGUAUCUAAAACAAAGUCCCCAC
......(((.((((((((.((....)))))).(((((((((.......))))))))))))).(((((.(((((((.......))).)))).....))))).)))................ ( -24.50, z-score =  -0.71, R)
>droSec1.super_8 2852025 119 + 3762037
AUAAGAAGAAAACGGCAUUGGAUUGCCAUGUUAGGGAAUGCUGCAACUGCAUUCUUGCGUUAACAAUUACUUCAGUACAUAUCUGAAAGUCUAACAUUGUAUCUAAAACAAAGUCCCAU-
......(((....((((......))))((((((((((((((.......)))))))...............(((((.......)))))...)))))))....)))...............- ( -25.50, z-score =  -1.12, R)
>droYak2.chrX 19842534 95 + 21770863
AUAUGAAGAAAACGGCAUUAAAUUGCCUUGCACGGGAAUGCUGCAACUGCAUUCUUGUGUUAACAAUUACUUCAGCACAUAUAUGAAAGUCGCAA-------------------------
...(((((.....((((......))))..((((((((((((.......)))))))))))).........)))))((((..........)).))..------------------------- ( -28.50, z-score =  -3.37, R)
>consensus
AUAAGAAGAAAACGGCAUUGGAUUGCCAUGCUCGGGAAUGCUGCAACUGCAUUCUUGCGUUAACAAUUACUUCAGUACAUAUCUGAAAGUCUAACAU_______________________
....((((.....((((......))))..((.(((((((((.......))))))))).)).........))))............................................... (-21.75 = -21.62 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:34 2011