| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,607,333 – 20,607,434 |
| Length | 101 |
| Max. P | 0.947205 |
| Location | 20,607,333 – 20,607,434 |
|---|---|
| Length | 101 |
| Sequences | 10 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 65.32 |
| Shannon entropy | 0.68490 |
| G+C content | 0.37902 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -8.64 |
| Energy contribution | -8.94 |
| Covariance contribution | 0.30 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20607333 101 + 22422827 GCCCAUGGCUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCGAAAA-AUGGGU------AAAAAUC---UGACACAAACGAGCAG-------AAAAUUCCAUAAAA ((((((((((..(((((((....))))))).....))))((((......)))).....-))))))------.....((---((.(........))))-------)............. ( -23.30, z-score = -1.48, R) >droSim1.chrX 15832850 101 + 17042790 GCCCAUGGCUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCGGAAA-AUGGGU------AAAAAUC---UGACACAAACGAGCAG-------AAAAAGCCAUAAAA (((((((((.......))).((((((....)))))).((((((......))))))...-))))))------.....((---((.(........))))-------)............. ( -25.40, z-score = -1.64, R) >droSec1.super_8 2844286 101 + 3762037 GCCCAUGGCUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCGGAAA-AUGGGU------AAAAAUC---UGACACAAACGAGCAG-------AAAAAGCCAUAAAA (((((((((.......))).((((((....)))))).((((((......))))))...-))))))------.....((---((.(........))))-------)............. ( -25.40, z-score = -1.64, R) >droEre2.scaffold_4690 17202987 101 + 18748788 GCCCAUGGCUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCGGAAA-AUGGGU------AAAAAUC---UGACACAAACGAGCAG-------CAAAAGCCAUAAAA ....((((((..........((((((....))))))(((((...((......((((..-......------.....))---))......))..))))-------)...)))))).... ( -26.02, z-score = -1.46, R) >droAna3.scaffold_12903 715353 85 - 802071 --------CUAAUUAUGUCAUUUGGA--AAGUCAAGGCUGCAAAGUCAAUUGCCGAAAAAAUGGC-----AAAAAAAAAAUGGGAAAAAAUGCA-ACAUAA----------------- --------....(((((((((((...--...((..((((....))))..((((((......))))-----))...........))..)))))..-))))))----------------- ( -15.00, z-score = -1.30, R) >dp4.chrXL_group1e 9252498 114 + 12523060 ----GGCCCUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCAGCAACAUGCGUGCCACAAAAAAGUAAGUGGCAUAAACGAGGAGUCGGGGAAAAGUGCCAUAAAA ----((((((...(((((..((((((....))))))(((((((......))))))).))))).(((((((..........))))))).....))).)))((.(.....).))...... ( -36.90, z-score = -3.17, R) >droPer1.super_22 735972 114 - 1688296 ----GGCCCUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCAGCAACAUGCGUGCCACAAAAAAGUAAGUGGCAUAAACGAGGAGUCGGGGAAAAGUGUCAUAAAA ----((((((...(((((..((((((....))))))(((((((......))))))).))))).(((((((..........))))))).....))).)))................... ( -35.90, z-score = -3.36, R) >droWil1.scaffold_180702 2666811 79 + 4511350 -----ACCUUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCCAAAAAAAAUAA-----AGAGGAAAAUGCAA-UAAAA---------------------------- -----.((((..((((....(((((((.....)..((((....))))....))))))....))))-----.)))).........-.....---------------------------- ( -14.50, z-score = -1.33, R) >droVir3.scaffold_12970 4932920 96 + 11907090 -----GGGUUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCCAAAAAAAAAGG-----AGAAAAAAUCCCAAAUAAAAAGUACACACAAUAAAA------------ -----.(((.((((.......(((((....)))))((((....))))))))))).........((-----(.......))).........................------------ ( -15.30, z-score = -1.18, R) >droGri2.scaffold_15081 3866348 93 - 4274704 -----GGCUUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCCAAAAAAGA--------GGAAAAAUUCCAAAAAAAAGGAAACUCGUAAUAAAA------------ -----(((.............(((((....)))))((((....))))....)))......((--------(......((((........)))).))).........------------ ( -19.50, z-score = -2.42, R) >consensus _____GGGCUAAUUAUGUCAUUUGGCGUAAGUCAAGGCUGCAAAGUCAAUUGCCGAAA_AUGGGU_____AAAAAAAC___UGACAAAAACGAGCAG_______AAA__GCCAUAAAA ............(((((((....))))))).....((((....))))....................................................................... ( -8.64 = -8.94 + 0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:34 2011