| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,600,663 – 20,600,772 |
| Length | 109 |
| Max. P | 0.957506 |
| Location | 20,600,663 – 20,600,772 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.31 |
| Shannon entropy | 0.14460 |
| G+C content | 0.46034 |
| Mean single sequence MFE | -32.87 |
| Consensus MFE | -26.95 |
| Energy contribution | -27.31 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20600663 109 + 22422827 AUAUCCCCUCGCUGGGAUUGAUCCUCUUAGCCCAUU-GAAUGUGUGAAACGAGGAUCCUUUGUCCCGUUUUAAGGCUCUUAA----------AUCUGGGGAAAAAUUUCCUGGCGAAUCC ........((((..(((....(((((..(((((((.-....)))(((((((.((((.....))))))))))).)))).....----------....)))))......)))..)))).... ( -33.00, z-score = -2.00, R) >droSim1.chrX 15825891 108 + 17042790 AUAUCCCCUCGCUGGGAUUGAUCCUCUUAGCCCAUU-GAAUGUGUGAAAUGAGGAUCCUUUGUCCCGUCUUAAGGCUCUUAA----------AUCUGGCGAAAA-UGUCCUGGCGAAUCC ........((((..((((.(((((((....(.(((.-....))).)....))))))).((((.((.(..(((((...)))))----------..).))))))..-.))))..)))).... ( -32.30, z-score = -2.81, R) >droSec1.super_8 2837576 109 + 3762037 AUAUCCCCUCGCUGGGAUUGAUCCUCUUAGCCCAUUUGAAUGUGUGAAAUGAGGAUCCUUUGUCCCGUCUUAAGGCUCUUAA----------AUCUGGCGAAAA-UGUCCUGGCGAAUCC ........((((..((((.(((((((....(.(((......))).)....))))))).((((.((.(..(((((...)))))----------..).))))))..-.))))..)))).... ( -32.50, z-score = -2.85, R) >droYak2.chrX 19828258 118 + 21770863 AUAUCCCUCCGCUGGGAUUGAUCCUCUUAGCCCAUU-GAAUGUGUGAAAUGAGGAUCCUUUGUCCCACUUUAAGGCUCUUAAGUCUGGUUAAAUCUGGCAAAAA-UGUCCUGGCGAAACC .........(((..((((.(((((((....(.(((.-....))).)....))))))).((((((........(((((....)))))..........))))))..-.))))..)))..... ( -33.27, z-score = -2.23, R) >droEre2.scaffold_4690 17196061 108 + 18748788 AUAUCCCCUCGCUGGGAUUGAUCCUCUUAGCCCAUU-GAAUGUGUGAAAUGAGGAUCCUUUGUCCCAUUUUAAGGCUCUUAA----------AUCUGGCAAAAG-UGUCCUGGCGAAUCC ........((((..((((.(((((((....(.(((.-....))).)....))))))).((((((....((((((...)))))----------)...))))))..-.))))..)))).... ( -33.30, z-score = -2.96, R) >consensus AUAUCCCCUCGCUGGGAUUGAUCCUCUUAGCCCAUU_GAAUGUGUGAAAUGAGGAUCCUUUGUCCCGUUUUAAGGCUCUUAA__________AUCUGGCGAAAA_UGUCCUGGCGAAUCC ........((((..((((.(((((((....(.(((......))).)....))))))).((((((((.......)).....................))))))....))))..)))).... (-26.95 = -27.31 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:33 2011