| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,578,557 – 20,578,654 |
| Length | 97 |
| Max. P | 0.542486 |
| Location | 20,578,557 – 20,578,654 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 76.58 |
| Shannon entropy | 0.41261 |
| G+C content | 0.50592 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -14.69 |
| Energy contribution | -14.58 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20578557 97 + 22422827 GAGCCGACAAUUUGCGGCUAAUUAGGGCCAACUAAUGGCCAAAUGUUCUCGCUUAGCGUGCCAUCCCUGCUCUUUCAUUUCCCGCUC---AACUCAUCUC (((..((......((((..(((.(((((......(((((...(((((.......))))))))))....)))))...)))..))))..---...))..))) ( -20.10, z-score = -0.19, R) >droPer1.super_22 698272 79 - 1688296 GAGCCACCAAUUUGCGGCUAAUUAGGGCCAACUAAUGGCCAAAUGUUCUACCUGAGCA--CCAUCUCUGUCUCUCCCUCUC------------------- .((((.(......).))))...((((((((.....)))))...(((((.....)))))--......)))............------------------- ( -18.20, z-score = -1.32, R) >dp4.chrXL_group1e 9215588 79 + 12523060 GAGCCACCAAUUUGCGGCUAAUUAGGGCCAACUAAUGGCCAAAUGUUCUACCUGAGCA--CCAUCUCUGUCUCGCCCUCUC------------------- .((((.(......).))))....(((((..((..((((.....(((((.....)))))--))))....))...)))))...------------------- ( -19.30, z-score = -1.31, R) >droYak2.chrX 19805839 99 + 21770863 GAGCCGCCAAUUUGCGGCUAAUUAAGGCCAACUAAUGGCCAAAUGUCCUCACUUAGCGGCCCAUUCGUGCUCUUCGAUUU-UGGCUCUGGAUCUCAUCUC .((((((......))))))......(((((.....)))))....((((......((.((((...(((.......)))...-.))))))))))........ ( -27.60, z-score = -1.29, R) >droSec1.super_8 2815558 97 + 3762037 GAGCCGACAAUUUGCGGCUAAUUAGGGCCAACUCUUGGCCAAAUGUUCUCGCUUAGCGUGCCAUCCCUGCACUUUCAUUUCUCGCUC---AACUCAUCUC ((((.((......((((..(.....(((((.....))))).....)..)))).....((((.......)))).........))))))---.......... ( -22.90, z-score = -1.29, R) >droSim1.chrX 15784016 97 + 17042790 GAGCCGACAAUUUGCGGCUAAUUAGGGCCAACUAAUGGCCAAAUGUUCUCGCUUAGCGUGCCAUCCCUGCACUUUCAUUUCUCGCUC---AACUCAUCUC ((((.((......((((..(.....(((((.....))))).....)..)))).....((((.......)))).........))))))---.......... ( -22.90, z-score = -1.26, R) >consensus GAGCCGACAAUUUGCGGCUAAUUAGGGCCAACUAAUGGCCAAAUGUUCUCGCUUAGCGUGCCAUCCCUGCACUUCCAUUUCUCGCUC___AACUCAUCUC .(((((........)))))......(((((.....)))))...............(((.........))).............................. (-14.69 = -14.58 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:29 2011