| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,571,067 – 20,571,174 |
| Length | 107 |
| Max. P | 0.525331 |
| Location | 20,571,067 – 20,571,174 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 69.67 |
| Shannon entropy | 0.54437 |
| G+C content | 0.45725 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -14.13 |
| Energy contribution | -15.41 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525331 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20571067 107 + 22422827 GAAAUGCAAUUGCCUUUGAGGGAAGA---ACCCUUUACGCGGAGUACGAUCAACA---AAGCUUCCAAAAUGUGAACAGCUGUGACCCAUAAACUAGUGGCAGUCGCAAGUCU-------- ((..(((.((((((...(((((....---.)))))((((((((((..........---..))))).....((....)))).)))..............)))))).)))..)).-------- ( -25.00, z-score = -0.40, R) >droSim1.chrX 15808084 107 + 17042790 GAAAUGCAAUUGCCUUUGAGGGGAGA---ACCCUUUGUACGGAGUACGAUCAACA---AAGCUCCCAAAAUGUGAACAGCUGUGACCCAGAAACUAGUGGCAGUCGCGAGUCU-------- ((..(((.((((((....(((((((.---...((((((...((......)).)))---))))))))....((....)).(((.....)))...))...)))))).)))..)).-------- ( -28.50, z-score = -0.88, R) >droSec1.super_8 2808408 106 + 3762037 GAAAUGCAAUUGCCUUUGAGGGGAGA---ACCCUUUGUACGGAGUACG-UCAAUA---AAGCUCCCAAAAUGUGAACAGCUGUGACCCAGAAACUAGUGGCAGUCGCGAGUCU-------- ((..(((.((((((....(((((((.---.....(((.(((.....))-))))..---...)))))....((....)).(((.....)))...))...)))))).)))..)).-------- ( -29.10, z-score = -1.18, R) >droYak2.chrX 19798250 107 + 21770863 GAAGUGCAAUUGCCUUUGAGGGGAGA---ACCCUUUAUACAGAGUACGAUCAACA---AAGCUCCCAAAAUGUAAAUAGCGGUGUUCCAAAUAAUAGUGGCAGUUGCCAGUCA-------- ((...(((((((((.(((...((((.---(((((...((((((((..........---..))))......))))...)).))).))))...)))....)))))))))...)).-------- ( -27.90, z-score = -1.66, R) >droEre2.scaffold_4690 17166943 106 + 18748788 GAAAUGCAAUUGCCUUUGAGGGGAGA---ACCCUUUAUACGGA-UACGAUCAACA---AAGCUCCCAAAAUGUAAACAGCUGGGUUCCAAAUAGUAGUGGCAGUUGCAAGUCU-------- ((..((((((((((..(((((((...---.)))))))...(((-...........---.....((((...((....))..)))).)))..........))))))))))..)).-------- ( -32.23, z-score = -2.50, R) >droVir3.scaffold_12970 4885766 121 + 11907090 GAGGCUCCAUUAGCUAUUAGGUAAGCUUUAACCAUUGCGUUUGCUUAAGUCAAUGUUUGGGCUUUUGGCUGGACUCGAAAUGCGCGCCGGACUUGGCUUAAGAAUUCGAGAUCUUUAGCCU (((((((((((..((..(((((((((............)))))))))))..))))...))))))).(((((((((((((...(..((((....))))....)..))))))...))))))). ( -35.00, z-score = -0.37, R) >consensus GAAAUGCAAUUGCCUUUGAGGGGAGA___ACCCUUUAUACGGAGUACGAUCAACA___AAGCUCCCAAAAUGUGAACAGCUGUGACCCAGAAACUAGUGGCAGUCGCGAGUCU________ ((..(((.((((((...(((((........))))).....(((((...............))))).................................)))))).)))..))......... (-14.13 = -15.41 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:29 2011