| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,562,001 – 20,562,063 |
| Length | 62 |
| Max. P | 0.896063 |
| Location | 20,562,001 – 20,562,063 |
|---|---|
| Length | 62 |
| Sequences | 3 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 82.20 |
| Shannon entropy | 0.24392 |
| G+C content | 0.32843 |
| Mean single sequence MFE | -10.47 |
| Consensus MFE | -7.93 |
| Energy contribution | -7.71 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.896063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20562001 62 - 22422827 GCGAUUAAAAGCUUCUGUACUUACCGAU--CUUACGCAAUCUGAACUAUAUCUUAGUGCAGAUU (((.....(((..((.((....)).)).--))).)))((((((.((((.....)))).)))))) ( -11.20, z-score = -1.43, R) >droSim1.chrX 15798899 64 - 17042790 GUGAUUAAACAUUUCUGUACUUACCCCUAAAAAACGCAAUCUUAACUAGUUUUUAGUACAGAUU .............((((((((........((((((.............)))))))))))))).. ( -10.22, z-score = -2.59, R) >droSec1.super_8 2799571 63 - 3762037 GUGAUUAAAAAUGUCUGUACUUACCCCU-AAAAACGCAAUCUUAACUAGUUCUUAGUACAGAUU ............(((((((((.....((-(................))).....))))))))). ( -9.99, z-score = -2.30, R) >consensus GUGAUUAAAAAUUUCUGUACUUACCCCU_AAAAACGCAAUCUUAACUAGUUCUUAGUACAGAUU .............((((((((.................................)))))))).. ( -7.93 = -7.71 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:28 2011