| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,538,729 – 20,538,835 |
| Length | 106 |
| Max. P | 0.864722 |
| Location | 20,538,729 – 20,538,835 |
|---|---|
| Length | 106 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 95.13 |
| Shannon entropy | 0.10835 |
| G+C content | 0.35729 |
| Mean single sequence MFE | -24.70 |
| Consensus MFE | -23.45 |
| Energy contribution | -23.08 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20538729 106 + 22422827 GGCUCGUUGACAGGGGG-AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCG ............((((.-((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..)))). ( -25.39, z-score = -1.34, R) >droSec1.super_8 2781422 106 + 3762037 GGCUCGUUGACAGGGGG-AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCG ............((((.-((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..)))). ( -25.39, z-score = -1.34, R) >droYak2.chrX 19770732 106 + 21770863 GGCUCGUUGACAGGGGG-AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCG ............((((.-((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..)))). ( -25.39, z-score = -1.34, R) >droEre2.scaffold_4690 17139284 106 + 18748788 GGCUCGUUGACAGGGGG-AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCUCG ............((((.-((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..)))). ( -22.39, z-score = -0.85, R) >droAna3.scaffold_12903 173450 106 + 802071 GGCUCGUUGACAGAGGG-AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCAAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUACGGCCCUG .............((((-.(((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).)))))...)))). ( -22.49, z-score = -0.85, R) >dp4.chrXL_group1e 9182261 106 + 12523060 GGCUCGUUGACAGGGGG-AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCAAUUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCUCUG ..........(((((..-((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..))))) ( -23.79, z-score = -1.79, R) >droPer1.super_22 664195 106 - 1688296 GGCUCGUUGACAGGGGG-AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCAAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCUCUG ..........(((((..-((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..))))) ( -23.79, z-score = -1.74, R) >droWil1.scaffold_180702 2736954 97 + 4511350 ----------GGGGAGGGAUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCAAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCUCCG ----------..((((..((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..)))). ( -24.99, z-score = -2.98, R) >droVir3.scaffold_12970 7050038 106 - 11907090 GCCUCGUUGACAGGGGG-AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCG ............((((.-((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..)))). ( -25.39, z-score = -1.37, R) >droMoj3.scaffold_6473 12629535 107 - 16943266 GCCUCGUUGACAGGGGGGAUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCG ............((((..((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..)))). ( -27.29, z-score = -1.72, R) >droGri2.scaffold_15081 482505 106 + 4274704 GCCUCGUUGACAGGGGG-AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCG ............((((.-((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..)))). ( -25.39, z-score = -1.37, R) >consensus GGCUCGUUGACAGGGGG_AUAUAAAUGUUGUGAUUUCUUAAUUUUUGUUUGCAUUUUUCUCGAAUUUAGUAGGCUGUUGAGGUAAUUACACUAAUUAUAUGGCCCCG ............((((..((((((.((.((((((((((((((....((((((................)))))).))))))).))))))).)).))))))..)))). (-23.45 = -23.08 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:26 2011