| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,536,746 – 20,536,816 |
| Length | 70 |
| Max. P | 0.582546 |
| Location | 20,536,746 – 20,536,816 |
|---|---|
| Length | 70 |
| Sequences | 11 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 73.60 |
| Shannon entropy | 0.53498 |
| G+C content | 0.49441 |
| Mean single sequence MFE | -16.19 |
| Consensus MFE | -9.53 |
| Energy contribution | -9.36 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20536746 70 - 22422827 CCCUCGCUAG---UCCG------CAUCCAAAGAUGAUUUUUGCUGACAGCCGACAGUCAGCGCCGUGUCAGAAAUCAGA--- .....((...---...)------).........((((((((((((((........)))))))........)))))))..--- ( -14.50, z-score = -0.23, R) >droPer1.super_22 661635 82 + 1688296 CCCUCGGUAAGUUUUUGGGCUGCUGUUCAAAAAUGAUUUUAGUUGACAGCCAACAGUCAGCGCCGUGUCAGAAAUCACGAGA ..((((((..((((((((((....)))))))))).......((((((........)))))))))(((........)))))). ( -25.30, z-score = -2.34, R) >dp4.chrXL_group1e 9179414 81 - 12523060 CCCUCGGUAAG-UUUUGGGCUGCUAUUCAAAAAUGAUUUUAGUUGACAGCCAACAGUCAGCGCCGUGUCAGAAAUCACGAGA ..((((.....-((((((((.((...(((....))).....((((((........)))))))).)).))))))....)))). ( -19.50, z-score = -0.78, R) >droAna3.scaffold_12903 626674 76 + 802071 CCCUCGCUAA---CUGGCGGCCUUAUUCAAAAAUGAUUUUAGCUGACAGCCAACAGUCAGCGCCGUGUCAGAAAUCACG--- ..........---((((((((.....(((....))).....((((((........)))))))))))..)))........--- ( -20.10, z-score = -1.95, R) >droEre2.scaffold_4690 17137149 70 - 18748788 CCCUCGCCAG---UCCG------CCUCCAAAGAUGAUUUUUGCUGACAGCCGACAGUCAGCGCCGUGUCAGAAAUCAGA--- ..........---....------..........((((((((((((((........)))))))........)))))))..--- ( -13.10, z-score = 0.20, R) >droYak2.chrX 19768711 70 - 21770863 CCCUCGCUAG---UCCG------CAUCCAAAGAUGAUUUUUGCUGACAGCCGACAGUCAGCGCCGUGUCAGAAAUCAGA--- .....((...---...)------).........((((((((((((((........)))))))........)))))))..--- ( -14.50, z-score = -0.23, R) >droSec1.super_8 2779466 70 - 3762037 CCCUCGCUAG---UCCG------CAUCCAAAGAUGAUUUUUGCUGACAGCCGACAGUCAGCGCCGUGUCAGAAAUCAGA--- .....((...---...)------).........((((((((((((((........)))))))........)))))))..--- ( -14.50, z-score = -0.23, R) >droSim1.chrX 15760609 70 - 17042790 CCCUCGCUAG---UCCG------CAUCCAAAGAUGAUUUUUGCUGACAGCCAACAGUCAGCGCCGUGUCAGAAAUCAGA--- .....((...---...)------).........((((((((((((((........)))))))........)))))))..--- ( -14.50, z-score = -0.67, R) >droVir3.scaffold_12970 4850728 72 - 11907090 CCCUCGCAGC---AGUG----GCUUUCAAAAAAUAAUUUCAGUUGACAGGCAGCAGUUAGCGCCACUUCAAAAAUCAGA--- ........(.---((((----(((((....)))........((((((........)))))))))))).)..........--- ( -12.80, z-score = -0.01, R) >droMoj3.scaffold_6249 2537 63 - 5329 --------------UCG--CAGCCAUCAAAUAAUAAUUUGAGUUGACAGCCAGCAGUCAGCGCCAUGUCAGAAAUCACA--- --------------..(--(.....((((((....))))))((((((........))))))))................--- ( -12.40, z-score = -1.79, R) >droGri2.scaffold_15081 3790483 72 + 4274704 CCCUCGCAGC---UGUG----GCUAACAAAAAAGAAUUUCGGUUGACAGACAGCAGUCAGCGCCACAUUAGAAAAAGGU--- .(((......---((((----((..........(.....).((((((........))))))))))))........))).--- ( -16.84, z-score = -0.91, R) >consensus CCCUCGCUAG___UCCG______CAUCCAAAAAUGAUUUUAGCUGACAGCCAACAGUCAGCGCCGUGUCAGAAAUCAGA___ .................................((((....((((((........)))))).....))))............ ( -9.53 = -9.36 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:25 2011