| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,523,788 – 20,523,922 |
| Length | 134 |
| Max. P | 0.943946 |
| Location | 20,523,788 – 20,523,922 |
|---|---|
| Length | 134 |
| Sequences | 6 |
| Columns | 136 |
| Reading direction | forward |
| Mean pairwise identity | 83.22 |
| Shannon entropy | 0.30303 |
| G+C content | 0.42848 |
| Mean single sequence MFE | -33.33 |
| Consensus MFE | -20.03 |
| Energy contribution | -20.95 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.943946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20523788 134 + 22422827 GCCCGUUUUUAACCCCUUUUUUGCUCUACAAAUACAAUU-ACAAUUGUUCGCGCUCGCG-AAAAGGGGUUAAGGCGGGUAAAUUUCAAAUUUCACUGACCGUUUUUACCUAAACUACCGAGAAUCGCGUUUUACAG (((((((((.(((((((((..............(((((.-...)))))((((....)))-)))))))))))))))))))...............(((...((((......)))).((((.....)).))....))) ( -34.80, z-score = -2.66, R) >droAna3.scaffold_12903 612654 116 - 802071 UCCUUUUUUUAACCCCUUUUC-GCUCUACAAAUACAAUUUGCAAUUGUUAGCGUGGGCACAAAAGGGGUUAGGCCUGG-------------------GCCAUUCGUACCUAAGCUACCAGGAAUCGCGUUUUACGG ((((.....(((((((((((.-((.((((....(((((.....)))))....))))))..)))))))))))(((.(((-------------------(.........)))).)))...))))....((.....)). ( -33.10, z-score = -1.44, R) >droEre2.scaffold_4690 17124187 133 + 18748788 GCCCCUUUUUAACCCCUUUUU-GCUCUACAAAUACAAUU-ACAAUUGUUCGCUCUCGCG-AAAAGGGGUUAACGCGGGUAAAUUUCAAAUUUCACUGACCGUUUUUACCUAAACUACCGAGAAUCGCGUUUUACGG ...((....((((((((((((-((.........(((((.-...)))))........)))-)))))))))))(((((((((((..(((........))).....))))))....((....))...))))).....)) ( -34.23, z-score = -3.36, R) >droYak2.chrX 19754134 133 + 21770863 GCCCCUUUUUAACCCCUUUUU-GCUCUACAAAUACAAUU-ACAAUUGUUCGCGCUCGCG-AAAAGGGGUUAAGGCGGGUAAAUUUCAAAUUUCACUGACCGUUUUUACCUAAACUACCGAGAAUCGCGUUUUACGG (((.....(((((((((((((-((.........(((((.-...)))))........)))-)))))))))))))))(((((((..(((........))).....)))))))......(((.(((......))).))) ( -36.63, z-score = -3.08, R) >droSec1.super_8 2766493 109 + 3762037 GCCCCUUUUUAACCCCUUUCU-GCUCUACAAAUACAAUU-ACAAUUGUUCGCGCUCGCG-AAAAGGGGCUAAGGCGA------------------------UUUUUACCUAAACUACCGAGAAUCGCGUUUUACAG ((((((((.............-...........(((((.-...)))))((((....)))-)))))))))....((((------------------------(((((............)))))))))......... ( -28.30, z-score = -3.10, R) >droSim1.chrX 15747476 133 + 17042790 GCCCCUUUUUAACCCCUUUCU-GCUCUACAAAUACAAUU-ACAAUUGUUCGCGCUCGCG-AAAAGGGGUUAAGGCGGGUAAAUUUCGAAUUUCACUGACCGUUUUUACCUAAACUACCGAGAAUCGCGUUUUACAG ...((.(((((((((((((..-...........(((((.-...)))))((((....)))-)))))))))))))).))(((((...(((.((((.......((((......))))....)))).)))...))))).. ( -32.90, z-score = -2.16, R) >consensus GCCCCUUUUUAACCCCUUUUU_GCUCUACAAAUACAAUU_ACAAUUGUUCGCGCUCGCG_AAAAGGGGUUAAGGCGGGUAAAUUUCAAAUUUCACUGACCGUUUUUACCUAAACUACCGAGAAUCGCGUUUUACAG ..(((.(((((((((((((...((.........(((((.....)))))........))...))))))))))))).))).......................................................... (-20.03 = -20.95 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:21 2011