| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,509,184 – 20,509,288 |
| Length | 104 |
| Max. P | 0.524456 |
| Location | 20,509,184 – 20,509,288 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.47 |
| Shannon entropy | 0.32395 |
| G+C content | 0.54605 |
| Mean single sequence MFE | -39.74 |
| Consensus MFE | -27.52 |
| Energy contribution | -27.20 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524456 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20509184 104 - 22422827 UAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCGGAAGGCCA-AACGAUGUGGGGGAAUG--------------- .........((..((((((.((.(((...(((.((((.(((((((.((.(....)..)).))))))).)))).))).(....)))).-.))....))))))..))--------------- ( -35.40, z-score = -0.91, R) >droSim1.chrX 15733050 104 - 17042790 UAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCUGAUGAACC-AACGAGGUGGGGGAAUG--------------- .........((..((((((.((.(((..((((.((((.(((((((.((.(....)..)).))))))).))))..))))......)))-.))....))))))..))--------------- ( -35.20, z-score = -1.21, R) >droSec1.super_8 2752341 103 - 3762037 UAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCUAAUGACC--CACGAGGUGGGGGAAUG--------------- .........((..((((((.((((((..((((.((((.(((((((.((.(....)..)).))))))).))))..)))).....)))--)))....))))))..))--------------- ( -41.20, z-score = -2.61, R) >droYak2.chrX 19738876 120 - 21770863 UAGUGUGACCAGGCCCCCAAGUGGGUGUGUUUGAGGUGGCCAUAGUUGGGGAAACUUCACUUAUGGCGGCUUGCAAACUGAGGACCAUAAUGGGCUGAUGGCAAACGAGGCGGGCAAUCG ..((.((.((((((((....((((....(((((((((.((((((((..((....))..)).)))))).)))).)))))......))))...)))))..))))).)).............. ( -43.00, z-score = -0.86, R) >droEre2.scaffold_4690 17109484 120 - 18748788 CAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGGGGAAACUUCACCUAUGGCGGCUUGAAAACUGAAGACCAUAAUGGGCUGCGCACAAACGAGGCGGGGAAAUG ..(((((....(((((....((((....((((.((((.(((((((.((((....).))).))))))).))))..))))......))))...))))).))))).................. ( -43.90, z-score = -1.65, R) >consensus UAGUGUGACCAGGCCCCUAAGUGGGUGUGUUUGAGGUGGCCAUAGCUGCGGAAACUUCACUUAUGGCGGCUUGAAAGCUGAAGACCA_AACGAGGUGGGGGAAUG_______________ ((((.....((.((((......)))).))(((.((((.(((((((.((.(....)..)).))))))).)))).)))))))........................................ (-27.52 = -27.20 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:20 2011