| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,498,380 – 20,498,435 |
| Length | 55 |
| Max. P | 0.616945 |
| Location | 20,498,380 – 20,498,435 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 86.36 |
| Shannon entropy | 0.22487 |
| G+C content | 0.38813 |
| Mean single sequence MFE | -14.03 |
| Consensus MFE | -9.21 |
| Energy contribution | -9.78 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20498380 55 - 22422827 AGGCAUUUGUUUUCCAUUUGGGGAUUUUCAUCCGCAAAAUACUCAAAUGCUUGCU (((((((((.......((((.((((....)))).)))).....)))))))))... ( -16.60, z-score = -3.03, R) >droEre2.scaffold_4690 17099499 54 - 18748788 AGGCAUUUGUUUUCCAUUUGGGG-CUUUCAUCCGCAAAAUACUCAAAUGGUGUUU .............(((((((((.-.(((........)))..)))))))))..... ( -10.30, z-score = -0.46, R) >droYak2.chrX 19728328 55 - 21770863 AGGCAUUUGCUUUCCUUUUGGCGUCUUUUAUCCGCAAAAUACUCAAAUGCCGUUU .((((((((......(((((.((.........)))))))....)))))))).... ( -12.90, z-score = -2.41, R) >droSim1.chrX 15719819 55 - 17042790 AGGCAUUUGAUUUCCAUUUGGGGGUUUUCAUCCGAAAAAUACUCAAAUGCUUGCU (((((((((((..((....))..)(((((....)))))....))))))))))... ( -16.30, z-score = -2.57, R) >consensus AGGCAUUUGUUUUCCAUUUGGGG_CUUUCAUCCGCAAAAUACUCAAAUGCUGGCU .((((((((.......((((.((........)).)))).....)))))))).... ( -9.21 = -9.78 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:19 2011