| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,490,862 – 20,490,944 |
| Length | 82 |
| Max. P | 0.832521 |
| Location | 20,490,862 – 20,490,944 |
|---|---|
| Length | 82 |
| Sequences | 5 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 94.32 |
| Shannon entropy | 0.10204 |
| G+C content | 0.56938 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -22.88 |
| Energy contribution | -22.48 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20490862 82 + 22422827 -GCCGGGCGGGGACAGGAUGCUGUCCAACAACACGGCCUACCAACUUAAUGUGCCGGCACUUCCUGGCACACAAACACACACA -(((((....((((((....)))))).....).))))............((((((((......))))))))............ ( -28.80, z-score = -2.37, R) >droSim1.chrX 15711984 82 + 17042790 -GCCGGGCGGGGACAGGAUGCUGUCCAACAACACGGCCUACCAACUUAAUGUGCCGGCACUUCCUGGCACACAAACACACACA -(((((....((((((....)))))).....).))))............((((((((......))))))))............ ( -28.80, z-score = -2.37, R) >droSec1.super_8 2733921 82 + 3762037 -GCCGGGCGGGGACAGGAUGCUGUCCAACAACACGGCCUACCAACUUAAUGUGCCGGCACUUCCUGGCACACAAACACACACA -(((((....((((((....)))))).....).))))............((((((((......))))))))............ ( -28.80, z-score = -2.37, R) >droYak2.chrX 19720798 82 + 21770863 UAGGAAGGG-GGACAGGAUGCUGUCCAACAACACGGCCUACCAACUUAAUGUGCCGGCACUUCCUGGCACACAAACACACACA ..((.(((.-((((((....))))))..(.....).))).)).......((((((((......))))))))............ ( -25.90, z-score = -2.25, R) >droEre2.scaffold_4690 17092068 83 + 18748788 CGGAAGGGGUGGACAGGAUGCUGUCCAACAACACGGCCUACCAACUUAAUGUGCCGGCACUUCCUGGCACACAAACACACACA .((.(((..(((((((....))))))).(.....).))).)).......((((((((......))))))))............ ( -26.90, z-score = -1.75, R) >consensus _GCCGGGCGGGGACAGGAUGCUGUCCAACAACACGGCCUACCAACUUAAUGUGCCGGCACUUCCUGGCACACAAACACACACA ....(((...((((((....))))))........((....))..)))..((((((((......))))))))............ (-22.88 = -22.48 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:18 2011