| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,490,688 – 20,490,808 |
| Length | 120 |
| Max. P | 0.986051 |
| Location | 20,490,688 – 20,490,808 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.81 |
| Shannon entropy | 0.11103 |
| G+C content | 0.42917 |
| Mean single sequence MFE | -36.36 |
| Consensus MFE | -33.09 |
| Energy contribution | -32.74 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.986051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20490688 120 + 22422827 CGGGAGAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCGACGCGCUUUUGAUAUUUUUGCCUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCCCCGGCCAAUGA ((((.((((((((((.((((((((((((..........))))))).))))).))))))))))....)))).((...(((.........((((((......)))))).....)))...)). ( -36.24, z-score = -2.53, R) >droSim1.chrX 15711810 120 + 17042790 CGGGAGAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCGACGCGCUUUUGAUAUUUUUGCCUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCCCCGGCCAAUGA ((((.((((((((((.((((((((((((..........))))))).))))).))))))))))....)))).((...(((.........((((((......)))))).....)))...)). ( -36.24, z-score = -2.53, R) >droSec1.super_8 2733747 120 + 3762037 CGGGAGAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCGACGCGCUUUUGAUAUUUUUGCCUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCCCCGGCCAAUGA ((((.((((((((((.((((((((((((..........))))))).))))).))))))))))....)))).((...(((.........((((((......)))))).....)))...)). ( -36.24, z-score = -2.53, R) >droYak2.chrX 19720595 120 + 21770863 CGGGAGAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCGACGCGCUUUUGAUAUUUUUGCCUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGAAUUGCCCCGGCCAAUGA ((((.((((((((((.((((((((((((..........))))))).))))).))))))))))....)))).((...(((..((......))(((((((...)))))))...)))...)). ( -33.70, z-score = -2.12, R) >droEre2.scaffold_4690 17091849 120 + 18748788 CGGGAGAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCGACGCGCUUUUGAUAUUUUUGCCUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCCCCGGCCAAUGA ((((.((((((((((.((((((((((((..........))))))).))))).))))))))))....)))).((...(((.........((((((......)))))).....)))...)). ( -36.24, z-score = -2.53, R) >droAna3.scaffold_12903 572457 117 - 802071 ---AAAAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCAACGCGCUUUUGAUAUUUUUGCAUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCUCCGGCCAAUGA ---((((((((((((.((((((((((((..........))))))).))))).)))))))))))).......((...(((....(((..((((((......)))))).))).)))...)). ( -35.40, z-score = -2.98, R) >dp4.chrXL_group1e 9127337 120 + 12523060 GGGAGAAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCAACGCGCUUUUGAUAUUUUUGCAUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCUCCGGCCAAUGA (.(((((((((((((.((((((((((((..........))))))).))))).))))))))))))).)....((...(((....(((..((((((......)))))).))).)))...)). ( -39.90, z-score = -3.57, R) >droPer1.super_22 609102 120 - 1688296 GGGAGAAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCAACGCGCUUUUGAUAUUUUUGCAUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCUCCGGCCAAUGA (.(((((((((((((.((((((((((((..........))))))).))))).))))))))))))).)....((...(((....(((..((((((......)))))).))).)))...)). ( -39.90, z-score = -3.57, R) >droWil1.scaffold_180702 2796994 118 + 4511350 --ACGGCAAUGAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCAACGCGCUUUUGAUAUUUUUGCAUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCUCCGGCCAAUGA --..(((...(((....(((((((((((..........))))))).))))(((((((.(((......))).)))))))..........((((((......)))))).)))..)))..... ( -32.80, z-score = -1.62, R) >droVir3.scaffold_12970 4786324 120 + 11907090 CGGAGAAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCAGCGCGCUUUUGAUAUUUUUGCAUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCACAGCUCCGGCCAAUGA ..(((((((((((((.((((((((((((..........)))))))).)))).)))))))))))))......((...(((....(((....((((......))))...))).)))...)). ( -36.00, z-score = -2.18, R) >droMoj3.scaffold_6473 4237173 120 + 16943266 CGGAGAAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCAGCGCGCUUUUGAUAUUUUUGCAUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAAUGCUCCGGCCAAUGA ..(((((((((((((.((((((((((((..........)))))))).)))).)))))))))))))......((...(((....(((....((((......))))...))).)))...)). ( -36.00, z-score = -2.18, R) >droGri2.scaffold_15081 3738132 120 - 4274704 CAGAGAAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCAACGCGCUUUUGAUAUUUUUGCAUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCUCCGGCCAAUGA ..(((((((((((((.((((((((((((..........))))))).))))).)))))))))))))......((...(((....(((..((((((......)))))).))).)))...)). ( -37.70, z-score = -3.43, R) >consensus CGGAAAAUGUCAGAAAUGCGUGUGAAAAAUAAACGAGAUUUUCGCAACGCGCUUUUGAUAUUUUUGCAUGACAGAAGCCAAAUGAGAAAAUGCGAUUUUCCGCAUUGCUCCGGCCAAUGA ..(((((((((((((.((((((((((((..........)))))))).)))).)))))))))))))......((...(((....(....((((((......)))))).)...)))...)). (-33.09 = -32.74 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:17 2011