| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,433,559 – 20,433,675 |
| Length | 116 |
| Max. P | 0.755557 |
| Location | 20,433,559 – 20,433,675 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.27 |
| Shannon entropy | 0.43964 |
| G+C content | 0.35934 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -13.92 |
| Energy contribution | -14.36 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20433559 116 - 22422827 UUAACAAAUGCCAGUGGGUGCUGAACUUGCACACUCAAUAAUAUGGCAAAUACUCGC-CAAAUGUGUCUUGAGGACAUCAAUAAAUU---UAUUUAAUGCUCACUUCCAUUUUAAACUCG .....(((((..(((((((..((((..................((((........))-))...(((((.....))))).........---..))))..)))))))..)))))........ ( -22.70, z-score = -1.46, R) >droEre2.scaffold_4690 17034265 96 - 18748788 UUAACAAAUGCCAGUGGGUGCUGAAUGUGCACACUGAAAAAUAUGGUAAAUGCGCAAGAAAACAUGCCUUAAGGACAUUAAUAAAUU---UAUUCAAUG--------------------- ......((((((((((.(..(.....)..).)))).........((((....(....)......))))....)).))))........---.........--------------------- ( -17.10, z-score = -0.11, R) >droYak2.chrX 19660708 103 - 21770863 UUAACUAAUGCCAGUGGGUGCUGAAUGUGCACACUCAAUAAUAUGGUAAAUACUUCAAGAAAUAUGCCUUUAGGACACCAGUAAUUCCAGUAUUCUAAAAUCU----------------- ........(((((.((((((.((......))))))))......)))))((((((....(((.(((.((....))......))).))).)))))).........----------------- ( -16.00, z-score = 0.72, R) >droSec1.super_8 2664455 116 - 3762037 UUAGCAAAUGCCAGUGGGUGCUGAAGUUGCACACUCAAUACUAUGGCAAGUACUCAA-AAAAUGUGUCUUAAGGACAUCCAUAAAUU---UAUUUAACACUCGCUGGCAUUUUUAACUCG ((((.(((((((((((((((.((((((((......))))..(((((...........-.....(((((.....))))))))))....---..)))).))))))))))))))))))).... ( -32.69, z-score = -3.57, R) >droSim1.chrX_random 5333234 116 - 5698898 UUAACAAAUGCCAGUGGGUGCUGAAGUUGCACACUCAAUACUAUGGCAAGUACUCAA-AAAAUGUGUCUUAAGGACAUCAAUAAAUU---UAUUUAAUGCUCGCUGGCAUUUUUAACUCG ((((.((((((((((((((..((((.((((.((..........))))))........-.....(((((.....))))).........---..))))..)))))))))))))))))).... ( -30.40, z-score = -3.10, R) >consensus UUAACAAAUGCCAGUGGGUGCUGAAGUUGCACACUCAAUAAUAUGGCAAAUACUCAA_AAAAUGUGUCUUAAGGACAUCAAUAAAUU___UAUUUAAUGCUCGCU__CAUUUU_AACUCG ........(((((.((((((.((......))))))))......)))))...............(((((.....))))).......................................... (-13.92 = -14.36 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:10 2011