| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,432,024 – 20,432,097 |
| Length | 73 |
| Max. P | 0.642666 |
| Location | 20,432,024 – 20,432,097 |
|---|---|
| Length | 73 |
| Sequences | 7 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 60.94 |
| Shannon entropy | 0.66668 |
| G+C content | 0.59907 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -12.69 |
| Energy contribution | -12.19 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.88 |
| Mean z-score | -0.46 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20432024 73 - 22422827 --UUCUGGUUGGUUGCCAUGGGGCAAGGAGCUGGGGA--------------GAGGAGCGGGGCGCCUGAAUGGGCAGCCCAAGUAUGCG-- --(((..(((..(((((....)))))..)))..))).--------------.....(((((((((((....)))).)))).....))).-- ( -28.40, z-score = -1.01, R) >droPer1.super_22 537936 70 + 1688296 UAUUCUGGUUGGUGGGUAU-GGUCAGGGGAU--------------------GGUAACCAGGGGGCUUUAGAAGCAUCCACUGUUGUAGGGA ..(((((..((((((((..-..((..((...--------------------.....))..)).(((.....)))))))))))...))))). ( -15.60, z-score = 0.81, R) >droEre2.scaffold_4690 17032795 67 - 18748788 --UUCUGGUUGGUUGCCAUGGGGCAAGGGGC--------------------AAGGAACGGGGCGCCUGAGUGGGCGGUCCAAGUAUGCG-- --((((.(((..(((((....)))))..)))--------------------.))))..(((.(((((....))))).))).........-- ( -25.30, z-score = -1.22, R) >droYak2.chrX 19659220 87 - 21770863 --UUCUGGUUGGUUGCCAUGGGGCAAGGGGCUGGGAAGGGGAGCGUGGAACGGGGAGCGGGGCGCCUGGAUGAGCAGCCCAAGUAUGCG-- --(((..(((..(((((....)))))..)))..)))......(((((...((.....))(((((((.....).)).))))...))))).-- ( -29.00, z-score = 0.32, R) >droSec1.super_8 2662992 73 - 3762037 --UUCUGGUUGGUUGCCAUGGGGCAAGGAGCUGGGGA--------------GAGGAACGGGGCGCCUGAAUGGGCAGCCCAAGUAUGCG-- --(((..(((..(((((....)))))..)))..))).--------------........((((((((....)))).)))).........-- ( -27.90, z-score = -1.20, R) >droSim1.chrX 15660762 73 - 17042790 --UUCUGGUUGGUUGCCAUGGGGCAAGGAGCUGGGGA--------------GAGGAACGGGGCGCCUGAAUGGGCAGCCCAAGUAUGCG-- --(((..(((..(((((....)))))..)))..))).--------------........((((((((....)))).)))).........-- ( -27.90, z-score = -1.20, R) >droGri2.scaffold_15081 3677408 60 + 4274704 -------AUCUGCAGCUG-GGGGCGGGGUA---------------------AAAUAGUAAAAUAGUCUAAAGUGCAAUGCAUGUGCGUG-- -------...((((.((.-.((((......---------------------.............))))..))))))((((....)))).-- ( -11.81, z-score = 0.27, R) >consensus __UUCUGGUUGGUUGCCAUGGGGCAAGGAGCUGGG_A______________GAGGAACGGGGCGCCUGAAUGGGCAGCCCAAGUAUGCG__ .......(((..(((((....)))))..)))............................((((((((....)))).))))........... (-12.69 = -12.19 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:09 2011