| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,415,343 – 20,415,441 |
| Length | 98 |
| Max. P | 0.598926 |
| Location | 20,415,343 – 20,415,441 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 76.70 |
| Shannon entropy | 0.40799 |
| G+C content | 0.51596 |
| Mean single sequence MFE | -23.51 |
| Consensus MFE | -15.99 |
| Energy contribution | -15.08 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20415343 98 - 22422827 -----------GUGUGGAUUAUGCAGUUUCCGCUUGGCUGCAACUGCAGUUCCAUUUCCCCGUUUGCCAUUUCCACAUUUUCCAAUUCCAUUUCCACGCC----UGCAAUUGC------ -----------(((((((....((((........(((((((....))))..))).........))))....)))))))....(((((.((..........----)).))))).------ ( -20.23, z-score = -1.08, R) >droSim1.chrX 15642852 102 - 17042790 -----------GUGUGGAUUAUGCAGUUUCCGCUUGGCUGCCACUGCAGUUCCAUUUCCCCGUUUGCCAUUUCCACAUUUUCCAAUUCCAUUUCCACGCC------UUUCCACGCCUGC -----------(((((((....((((........(((((((....))))..))).........))))....)))))))................((.((.------.......)).)). ( -19.13, z-score = -1.31, R) >droSec1.super_8 2611098 102 - 3762037 -----------GUGUGGAUUAUGCAGUUUCCGCUUGGCUGCAACUGCAGUUCCAUUUCCCCGUUUGCCAUUUCCACAUUUUCCAAUUCCAUUUCCACGCC------UUUCCACGCCUGC -----------(((((((....((((........(((((((....))))..))).........))))....)))))))................((.((.------.......)).)). ( -20.13, z-score = -1.52, R) >droYak2.chrX 19640401 119 - 21770863 GUACGGGAGAGGUGUGGAUUAUGCAGUUUCCGCUUGGCUGCAACUGCAGUUCCAUUUCCCCGUUUGCCAUUUCCACGUUUUCCAUUUCCAUUUCCACGCCGUCACGCCAUCACGCCUGC ...((((.((((((((((...(((((((.......)))))))...((((..............)))).........................)))))))).)).((......)))))). ( -28.24, z-score = -0.00, R) >droEre2.scaffold_4690 17016536 96 - 18748788 -----------GUGUGGAUUAUGCAGUUUCCGCUUGGCUGCAACUGCAGUUCCAUUUCCCCGUUUGCCAUUUCCACAUUUCC------CAUUUCCACGCC------CCUCCACGCCUGC -----------(((((((....((((........(((((((....))))..))).........))))....)))))))....------......((.((.------.......)).)). ( -20.13, z-score = -1.65, R) >droAna3.scaffold_12903 482291 93 + 802071 -----------UGGUGGAUUAUGCAGUUUCCGCUUGAAUGCAACUGCAGUUCCAUUUCCACA-GCGGCAUGUCUGCAGUGCC-GUUGCCGUUGCCGUUGC----AAUUGC--------- -----------.((((((...(((((((...((......)))))))))..))))))....((-(((((((.......)))))-))))..(((((....))----)))...--------- ( -33.20, z-score = -1.40, R) >consensus ___________GUGUGGAUUAUGCAGUUUCCGCUUGGCUGCAACUGCAGUUCCAUUUCCCCGUUUGCCAUUUCCACAUUUUCCAAUUCCAUUUCCACGCC______CUUCCACGCCUGC ...........(((((((...(((((((...((......)))))))))................((.......)).................))))))).................... (-15.99 = -15.08 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:07 2011