| Sequence ID | dm3.chrX |
|---|---|
| Location | 20,400,658 – 20,400,757 |
| Length | 99 |
| Max. P | 0.652302 |
| Location | 20,400,658 – 20,400,757 |
|---|---|
| Length | 99 |
| Sequences | 11 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 85.27 |
| Shannon entropy | 0.27103 |
| G+C content | 0.35526 |
| Mean single sequence MFE | -22.97 |
| Consensus MFE | -14.05 |
| Energy contribution | -13.92 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 20400658 99 + 22422827 -------------AGCAAAGACAAAUUCAUGUUGCAUUCGUAGCUUAAGGAUAUUAUUGUAUCCUUA-GCAUCCUUUGUGCCCGGAGCUCCUUUUUGUUUCACU--UUUUGCAUA---- -------------.(((((((((((.....(((((....)))))((((((((((....)))))))))-).....)))))....(((((........)))))...--))))))...---- ( -25.70, z-score = -3.12, R) >droGri2.scaffold_15081 3643610 90 - 4274704 -------------AGCAAAGACAAAUUCAUGUUGCAUUUGUAGCUUAAGGAUAUUAUCGUA-------GCAUCCUUUGUGCCCGAAGC---UUUUUGUUUUACU--UUUUGCAUA---- -------------.(((((((..((..((....((.((((..((..((((((.(((...))-------).))))))...)).))))))---....))..))..)--))))))...---- ( -17.80, z-score = -0.73, R) >droMoj3.scaffold_6473 4104459 90 + 16943266 -------------AGCAAAGACAAAUUCAUGUUGCAUUUGUAGCUUAAGGAUAUUAUUGUA-------GCAUCCUUUGUGUCCAAAGC---UUUUUGUUUUACU--UUUUGCAUA---- -------------.(((((((((.....((((((((...(((.(.....).)))...))))-------))))......)))).(((((---.....)))))...--.)))))...---- ( -18.90, z-score = -1.21, R) >droVir3.scaffold_12970 4680819 90 + 11907090 -------------AGCAAAGACAAAUUCAUGUUGCAUUUGUAGCUUAAGGAUAUUAUUGUA-------GCAUCCUUUGUGUCCGACGU---UUUUUGUUUUACU--UUUUGCAUA---- -------------.(((((((((((...((((((((...(((.(.....).)))...))))-------))))..)))))((..((((.---....))))..)).--))))))...---- ( -17.70, z-score = -1.15, R) >droWil1.scaffold_180702 1611797 104 - 4511350 GGCCAAAGCCAAAGGCAAAGACAAAUUCAUGUUGCAUUUGUAGCUUAAGGAUAUUAUUGUA-------GCAUCCUUUGUGCUCGAUGC---UUUUUGUUUCAACU-UUUUGCAUA---- (((....)))....(((((((......((....(((((.(.(((..((((((.(((...))-------).))))))...)))))))))---....)).......)-))))))...---- ( -23.72, z-score = -0.43, R) >droPer1.super_22 502375 103 - 1688296 -------------AGCGAAGAAAAAUUCAUGUUGCAUUUGUAGCUUAAGGAUAUUAUUUUAUCCCUU-GCAUCCUUUGUGCCCGAAGCA--UUUUUGUUUCACUCAUUUUGCAUACAUA -------------.((((((..........(((((....)))))....(((((......)))))...-((((.....))))..((((((--....)))))).....))))))....... ( -21.60, z-score = -1.84, R) >dp4.chrXL_group1e 9023040 103 + 12523060 -------------AGCGAAGAAAAAUUCAUGUUGCAUUUGUAGCUUAAGGAUAUUAUUUUAUCCCUU-GCAUCCUUUGUGCCCGAAGCA--UUUUUGUUUCACUCAUUUUGCAUACAUA -------------.((((((..........(((((....)))))....(((((......)))))...-((((.....))))..((((((--....)))))).....))))))....... ( -21.60, z-score = -1.84, R) >droSim1.chrX 15628684 99 + 17042790 -------------AGCAAAGACAAAUUCAUGUUGCAUUCGUAGCUUAAGGAUAUUAUUGUAUCCUUU-GCAUCCUUUGUGCCCGGAGCUCCUUUUUGUUUCACU--UUUUGCAUA---- -------------.(((((((............((((.....((..((((((((....)))))))).-)).......))))..(((((........)))))..)--))))))...---- ( -24.00, z-score = -2.51, R) >droSec1.super_8 2596666 99 + 3762037 -------------CGCAAAGACAAAUUCAUGUUGCAUUCGUAGCUUAAGGAUAUUAUUGUAUCCUUU-GCUUCCUUUGUGCCCGGAGCUCCUUUUUGUUUCACU--UUUUGCAUA---- -------------.(((((((............((((....(((..((((((((....)))))))).-)))......))))..(((((........)))))..)--))))))...---- ( -26.40, z-score = -3.56, R) >droEre2.scaffold_4690 17001319 100 + 18748788 -------------AGCAAAGACAAAUUCAUGUUGCACUCGAAGCUUAAGGAUAUUAUUGUAUCCUUUUGCAUCCUUUGUGCCCGGAGCUCCUUUUUGUUUCACU--UUUUGCAUA---- -------------.(((((((............((((..((.((..((((((((....))))))))..)).))....))))..(((((........)))))..)--))))))...---- ( -29.20, z-score = -4.13, R) >droYak2.chrX 19625020 99 + 21770863 -------------AGCAAAGACAAAUUCAUGUUGCAUUCGAAGCUUAAGGAUAUUAUUGUAUCCUUU-GCAUCCUUUGUGCCCGGAGCUCCUUUUUGUUUCACU--UUUUGCAUA---- -------------.(((((((............((((..((.((..((((((((....)))))))).-)).))....))))..(((((........)))))..)--))))))...---- ( -26.00, z-score = -3.03, R) >consensus _____________AGCAAAGACAAAUUCAUGUUGCAUUUGUAGCUUAAGGAUAUUAUUGUAUCCUUU_GCAUCCUUUGUGCCCGAAGCU__UUUUUGUUUCACU__UUUUGCAUA____ ..............(((((((((((.....(((((....)))))....((((..................)))))))))....(((((........))))).....))))))....... (-14.05 = -13.92 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:04:02 2011